View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16443_high_1 (Length: 745)

Name: NF16443_high_1
Description: NF16443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16443_high_1
NF16443_high_1
[»] chr1 (4 HSPs)
chr1 (20-307)||(8631769-8632055)
chr1 (345-426)||(17743699-17743780)
chr1 (345-428)||(5716254-5716337)
chr1 (172-245)||(37108463-37108536)
[»] chr5 (3 HSPs)
chr5 (14-244)||(37609057-37609285)
chr5 (160-250)||(22861313-22861403)
chr5 (295-342)||(37609284-37609331)
[»] chr8 (1 HSPs)
chr8 (342-503)||(31007631-31007792)
[»] scaffold0047 (1 HSPs)
scaffold0047 (148-342)||(72685-72877)
[»] chr3 (1 HSPs)
chr3 (231-305)||(46673457-46673531)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 8632055 - 8631769
Alignment:
Q  20 ggaaacaatcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtagtgatcaagttcctattaccccatcaag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  8632055 ggaaacaatcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtag-gatcaagttcctattaccccatccag 8631957  T
Q  120 caaaaacttataacttaaactacttttgtaagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtc 219  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  8631956 caaaaacttataacttagactacttttgtaagataaaatcttatattagtgaaaagttgtgataaatttattttgtttcattccattatatttgattgtc 8631857  T
Q  220 ttattgcaaatataatataaatgtcatacatgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctatat 307  Q
    ||||||| |||||||||||||| |||||||||||||| | ||||| |||||||||||||||||||||||||| | |||||||||||||    
T  8631856 ttattgcgaatataatataaatatcatacatgttagtcgtaactagcaatttaaaaataatttgttcaaaaacagtcttcatctatat 8631769  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 345 - 426
Target Start/End: Complemental strand, 17743780 - 17743699
Alignment:
Q  345 ttttgaaagaatttttaaataaattattattaggtcgtggaccggtataataatcttgggccagagatacgccatatgtggt 426  Q
    ||||||||||||||||||||||  || ||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||    
T  17743780 ttttgaaagaatttttaaataatctactattacgtcgtggaccggtataataatattgggccagaggtacgtcatatgtggt 17743699  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 345 - 428
Target Start/End: Original strand, 5716254 - 5716337
Alignment:
Q  345 ttttgaaagaatttttaaataaattattattaggtcgtggaccggtataataatcttgggccagagatacgccatatgtggtcc 428  Q
    |||| ||||||||||||||||| ||| ||||| || |||||||||||||||||| ||||| ||||| |||  ||||||||||||    
T  5716254 ttttaaaagaatttttaaataatttactattacgttgtggaccggtataataatattgggtcagaggtacatcatatgtggtcc 5716337  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 37108463 - 37108536
Alignment:
Q  172 aaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtca 245  Q
    |||||||||||||||||||| |||  |||  ||||||||| |||||  ||||| |||||| ||| |||||||||    
T  37108463 aaagttgtgataaatttattgtgtcccatatcattatatttgattgcgttattacaaataaaatttaaatgtca 37108536  T

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Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 37609057 - 37609285
Alignment:
Q  14 cacagaggaaacaatcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtagtgatcaagttcctattacccc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37609057 cacagaggaaacaatcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtag-gatcaagttcctattacccc 37609155  T
Q  114 atcaagcaaaaacttataacttaaactacttttgtaagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcg 213  Q
    ||| ||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |    
T  37609156 atccagcaaaaacttttaacttagacta-ttttgtaagataaaatcttatattagtgaaaagttgtgataaatttattttgtttcattccattatatttg 37609254  T
Q  214 attgtcttattgcaaatataatataaatgtc 244  Q
    ||||||||||||| |||||||||||||||||    
T  37609255 attgtcttattgcgaatataatataaatgtc 37609285  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 22861313 - 22861403
Alignment:
Q  160 ttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtcatacat 250  Q
    ||||| ||||||||  |||||| ||||||||||| |||||   ||||||||| |||||||||||||||||| ||||||||||  |||||||    
T  22861313 ttataccagtgaaagtttgtgagaaatttattttatttcaaagcattatatttgattgtcttattgcaaatgtaatataaatagcatacat 22861403  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 37609284 - 37609331
Alignment:
Q  295 tcttcatctatatcagacccgtgcgatagtacaggtgaaaagtctagt 342  Q
    ||||| ||||||||| ||||||||||||| || |||||||||||||||    
T  37609284 tcttcttctatatcacacccgtgcgatagcacgggtgaaaagtctagt 37609331  T

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Target: chr8 (Bit Score: 130; Significance: 6e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 342 - 503
Target Start/End: Original strand, 31007631 - 31007792
Alignment:
Q  342 ttcttttgaaagaatttttaaataaattattattaggtcgtggaccggtataataatcttgggccagagatacgccatatgtggtccagattgacccggt 441  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||    
T  31007631 ttcttttgaaggaatttttatataaattattattaggtcgtggaccggtataataatcttgggccaaagatatgccatatgtgatccaaattgactcggt 31007730  T
Q  442 aactaatttaacttgggccacatttacgttccaacttgtctgttatgctctgacttgccaaa 503  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31007731 aactaatttaacttgggccacctttacgttccaacttgtctgttatgctctgacttgccaaa 31007792  T

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Target: scaffold0047 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 148 - 342
Target Start/End: Original strand, 72685 - 72877
Alignment:
Q  148 taagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtcata 247  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||||||| |||||||||||||| ||||||||  |||||||  |||||||||||    
T  72685 taagataaaatcttatatcagtgaaa-gttgaaataaatttattttgtttcatgtcattatattcgatt-tcttattgtgaatataaggtaaatgtcata 72782  T
Q  248 catgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctatatcagacccgtgcgatagtacaggtgaaaagtctagt 342  Q
    ||||||||| ||||||||||||||||| || ||||||| |||| |||||||||||||||||| | ||||||||||| || |||||||||||||||    
T  72783 catgttagtagcaactaacaatttaaagatcatttgtttaaaactaatcttcatctatatcatatccgtgcgatagcacgggtgaaaagtctagt 72877  T

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Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 46673531 - 46673457
Alignment:
Q  231 ataatataaatgtcatacatgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctat 305  Q
    |||||||||||||| |||||||||||  |||||| ||||||||||||||||||| |||||| |||||||||||||    
T  46673531 ataatataaatgtcttacatgttagtcacaactagcaatttaaaaataatttgtccaaaaacaatcttcatctat 46673457  T

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