View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16443_high_4 (Length: 297)
Name: NF16443_high_4
Description: NF16443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16443_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 50441207 - 50441484
Alignment:
| Q |
1 |
aaaaattgctcttcttcctttcagttttgctcattcctgttttgcttttatgcctacgtgagttaattcacgtttaaaaatattcgacgtgaattaactc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||| |
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| T |
50441207 |
aaaaattgctcttcttcctttcagttttgctcattcccgttttgcttttatgcctacgtgagttaattcaccttgaaaaatattcagcgtgaattaactc |
50441306 |
T |
|
| Q |
101 |
acattgaatatttttaaaggaaaaagtaattttgaaagggagaaaagcaattttcgaataaaaactgtattatttattgttttgggcctaatattttggt |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50441307 |
acattgaacatttttaaaggaaaaagtaattttgaaagggagaaaagcaattttcaaataaaaactgtattatttattgttctgggcctaatattttggt |
50441406 |
T |
|
| Q |
201 |
aattgcattaccagggtccaattaatctgcaacccaaagaaatcca-ttttttaaaattgtttattagacacccttat |
277 |
Q |
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| T |
50441407 |
aattgcattaccagggtccaattaatctgcaacccaaagaaatccatttttttaaaattgtttattagacacccttat |
50441484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 32191101 - 32191060
Alignment:
| Q |
114 |
ttaaaggaaaaagtaattttgaaagggagaaaagcaattttc |
155 |
Q |
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| T |
32191101 |
ttaagggaataagtaattttgaaagggagaaaagcaattttc |
32191060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 47533132 - 47533068
Alignment:
| Q |
2 |
aaaattgctcttcttcctttcagttttgctcattcctgttttgcttttatgcctacgtgagttaa |
66 |
Q |
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||||||||||||||| |||| |||| ||||||||| |||||||||| ||| |||||||||||| |
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| T |
47533132 |
aaaattgctcttctttcttttgtttttcctcattcctcttttgcttttgtgcatacgtgagttaa |
47533068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 16698347 - 16698497
Alignment:
| Q |
3 |
aaattgctcttcttcctttcagttttgctcattcctgttttgcttttatgcctacgtgagttaattcacgtttaaaaatattcgacgtgaattaactcac |
102 |
Q |
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||||||||||||| || || ||||||||||||| | || ||||| |||||||||||||||| |||||| ||||| | ||||| |||||||| |
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| T |
16698347 |
aaattgctcttctcccatttgtttttgctcattcccctcttccttttgtgcctacgtgagttaacacacgttgtaaaatgtctagcgtgagttaactcat |
16698446 |
T |
|
| Q |
103 |
attgaatatttttaaaggaaaaagtaattttgaaagggagaaaagcaattt |
153 |
Q |
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|||| |||||||| |||| || |||||| |||||||||| |||||||| |
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| T |
16698447 |
gctgaacatttttaagggaatgagcaattttaaaagggagaagagcaattt |
16698497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 17672583 - 17672733
Alignment:
| Q |
3 |
aaattgctcttcttcctttcagttttgctcattcctgttttgcttttatgcctacgtgagttaattcacgtttaaaaatattcgacgtgaattaactcac |
102 |
Q |
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||||||||||||| || || ||||||||||||| | || ||||| |||||||||||||||| |||||| ||||| | ||||| |||||||| |
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| T |
17672583 |
aaattgctcttctcccatttgtttttgctcattcccctcttccttttgtgcctacgtgagttaacacacgttgtaaaatgtctagcgtgagttaactcat |
17672682 |
T |
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| Q |
103 |
attgaatatttttaaaggaaaaagtaattttgaaagggagaaaagcaattt |
153 |
Q |
| |
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|||| |||||||| |||| || |||||| |||||||||| |||||||| |
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| T |
17672683 |
gctgaacatttttaagggaatgagcaattttaaaagggagaagagcaattt |
17672733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 42117366 - 42117289
Alignment:
| Q |
2 |
aaaattgctcttcttcctttcagttttgctcattcctgttttgcttttatgcctacgtgagttaattcacgtttaaaaat |
81 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||| |||| ||||| |||||| |||| ||| ||||| |||||||| |
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| T |
42117366 |
aaaattgctcttctcccttttggttttgctcattccccttttacttttgtgccta--tgagctaactcacgcttaaaaat |
42117289 |
T |
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