View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16443_high_5 (Length: 291)
Name: NF16443_high_5
Description: NF16443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16443_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 32869309 - 32869581
Alignment:
| Q |
19 |
catatgcctaagtaataatctctataagagattaagagtcactactatactatagtatatatgcaggatttcactaatgcaaaatattttcactgatgac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32869309 |
catatgcctaagtaataatctctataagagattaagagtcactactatactatagtatatatgcaggatttcactaatgcaaaatattttcactaatgac |
32869408 |
T |
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| Q |
119 |
attttacttcattgtttcatcttcaatccatcatccatcatcttttccaattcttcttcacattgattgcatatttgtttgtctcaatcatttgcttatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32869409 |
attttacttcattgtttcatcttcaatccatcatccatcatcttttccaattcttcttcacattgattgcatatttgtttgtctcaatcatttgcttatt |
32869508 |
T |
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| Q |
219 |
tcaacatcatcaacatcttgctttgttttgcttatttcatttccatttactttctattataagtttttccttt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32869509 |
tcaacatcatcaacatcttgctttgttttgcttatttcatttccatttactttctattataagtttttacttt |
32869581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 8303800 - 8303867
Alignment:
| Q |
127 |
tcattgtttcatcttcaatccatcatccatcatcttttccaattcttcttcacattgattgcatattt |
194 |
Q |
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| T |
8303800 |
tcattgtttcatcttcaatccattatccatcatcttttccgtttcttcttcacattgatttcatattt |
8303867 |
T |
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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 21869643 - 21869543
Alignment:
| Q |
127 |
tcattgtttcatcttcaatccatcatccatcatcttttccaattcttcttcacattgattgcatatttgtttgtctcaatcatttgcttatttcaacatc |
226 |
Q |
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| T |
21869643 |
tcattgtttgatcttcaattcatcatacatcatcttttccatttctcc---acactgatttaatattcgtttgtctccatcatttgcttatttcaacatc |
21869547 |
T |
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| Q |
227 |
atca |
230 |
Q |
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|||| |
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| T |
21869546 |
atca |
21869543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 19257343 - 19257291
Alignment:
| Q |
127 |
tcattgtttcatcttcaatccatcatccatcatcttttccaattcttcttcac |
179 |
Q |
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| T |
19257343 |
tcattgtttcctcttcaatccatcatccatcatcttttccatttcttcttcac |
19257291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 20767225 - 20767171
Alignment:
| Q |
127 |
tcattgtttcatcttcaatccatcatccatcatcttttccaattcttcttcacat |
181 |
Q |
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| T |
20767225 |
tcattgtttcatcttcaatccatcttcaatcatattttccatttcttcttcacat |
20767171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 21554015 - 21553978
Alignment:
| Q |
127 |
tcattgtttcatcttcaatccatcatccatcatctttt |
164 |
Q |
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| T |
21554015 |
tcattgtttcatcttcaatcaatcatccatcatctttt |
21553978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 8409619 - 8409655
Alignment:
| Q |
205 |
atcatttgcttatttcaacatcatcaacatcttgctt |
241 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
8409619 |
atcattagcttatttcaacatcatcaacatcttgctt |
8409655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 8409567 - 8409617
Alignment:
| Q |
127 |
tcattgtttcatcttcaatccatcatccatcatcttttccaattcttcttc |
177 |
Q |
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||||| ||||||||||||||| |||| ||||||||||||| ||||||||| |
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| T |
8409567 |
tcattctttcatcttcaatccttcattgatcatcttttccatttcttcttc |
8409617 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 26650394 - 26650422
Alignment:
| Q |
48 |
gattaagagtcactactatactatagtat |
76 |
Q |
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| T |
26650394 |
gattaagagtcactactatactatagtat |
26650422 |
T |
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