View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16443_low_1 (Length: 901)
Name: NF16443_low_1
Description: NF16443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16443_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 840; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 840; E-Value: 0
Query Start/End: Original strand, 18 - 893
Target Start/End: Complemental strand, 10255585 - 10254710
Alignment:
| Q |
18 |
atatctcggtagaattccgatccttgaaacctttgaaggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaagctgaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255585 |
atatctcggtagaattccgatccttgaaacctttgaaggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaagctgaata |
10255486 |
T |
|
| Q |
118 |
tccgtaaacacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaacaccatttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255485 |
tccgtaaacacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaacaccatttg |
10255386 |
T |
|
| Q |
218 |
catcaaaacggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10255385 |
catcaaaacggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatact |
10255286 |
T |
|
| Q |
318 |
catggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255285 |
catggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagca |
10255186 |
T |
|
| Q |
418 |
aaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtccagatatgacacgtgctgcggtgacagagc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255185 |
aaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtccagatatgacacgtgctgcggtgacagagc |
10255086 |
T |
|
| Q |
518 |
cacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaac |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255085 |
cacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaac |
10254986 |
T |
|
| Q |
618 |
gtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgt |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10254985 |
gtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccatcaccgtcgaagaggtggtagggtccacgtggaaggaactgt |
10254886 |
T |
|
| Q |
718 |
gggtttggtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtg |
817 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| |||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
10254885 |
gggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtg |
10254786 |
T |
|
| Q |
818 |
caaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
893 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10254785 |
caaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
10254710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 25 - 893
Target Start/End: Original strand, 10230247 - 10231115
Alignment:
| Q |
25 |
ggtagaattccgatccttgaaacctttgaaggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaagctgaatatccgtaa |
124 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| || | ||||||||||||||| |||||||| |||||||||||||| ||||||| ||||| | | |
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|
| T |
10230247 |
ggtagaattccgatccttgaaactttagatggatccgatctcaccggagaaccaccgaaaatcatgccaagaggattcatttcaagctgtatatcagcga |
10230346 |
T |
|
| Q |
125 |
acacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaacaccatttgcatcaaa |
224 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||||| | |||||| |
|
|
| T |
10230347 |
acacagcatattttttagtaatggcgaaatcatgaagaaacgaaggtcttttcatggagaatactggaacgtcgttatgtttaacaccattcgaatcaaa |
10230446 |
T |
|
| Q |
225 |
acggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggag |
324 |
Q |
| |
|
|||||||||||||||||| ||| | || ||||| ||||||||||| ||| ||||| |||||| ||| ||||| ||||| || ||||||||||| || |
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|
| T |
10230447 |
acggaaataggttaaaaaaggtcgaatgggaccataacggaaagcgaaacattcacttgtgtcagagtctattttaggatgcgccgtcatactcatcaag |
10230546 |
T |
|
| Q |
325 |
agtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagtt |
424 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||||| ||||||||||| || || |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10230547 |
agtttgccgttgaaatcataacggcccattgtttggatgtcaccgtttggtgttagtttgacttcataaggaagatctgattctcctaaagcaaaaagac |
10230646 |
T |
|
| Q |
425 |
tgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtccagatatgacacgtgctgcggtgacagagccacgtgc |
524 |
Q |
| |
|
||||||||||||||| |||||||||||| | || |||||||||||||| || || || || || | || || |||||| | || || |||||||| |
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|
| T |
10230647 |
ggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgggttatactgaccggttaacacccgtgctacaaccacggatccacgtgc |
10230746 |
T |
|
| Q |
525 |
agcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacgg |
624 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||| |||| || |||||| |
|
|
| T |
10230747 |
cgctaaagcaataagcgagttgaaaccagaaaacacgtttgggataagttggtgaccagctttgttttcaattttgtacttgtaggtttttacataacgg |
10230846 |
T |
|
| Q |
625 |
ctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttg |
724 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10230847 |
ctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcaccgtcaaagagatggtagggtccacgtggaaggaactgtgggtttg |
10230946 |
T |
|
| Q |
725 |
gtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgcaaagtt |
824 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10230947 |
gtccgtttcttatgtaagcaccgtaaagtgacggcgggagtgtacctttgatgattacacattgtgttggagggagttcgtctaggactggtgcaaagtt |
10231046 |
T |
|
| Q |
825 |
ttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
893 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10231047 |
ttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgataatgtc |
10231115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 25 - 893
Target Start/End: Original strand, 10239027 - 10239895
Alignment:
| Q |
25 |
ggtagaattccgatccttgaaacctttgaaggatcggaacctaccggagaaccaccggaaatcatgtcaagaggattcattccaagctgaatatccgtaa |
124 |
Q |
| |
|
||||||||||||||||||| ||| || || |||||||| | |||||| ||||||||| ||||||||||||||||||| ||| ||||||| ||||| | | |
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|
| T |
10239027 |
ggtagaattccgatccttggaactttcgatggatcggaccttaccggggaaccaccgaaaatcatgtcaagaggattaatttcaagctgtatatcagcga |
10239126 |
T |
|
| Q |
125 |
acacagcgtattttttagtaatggcgaaatcatgaagaaaagaaggtcttgtcatggagaaaaccggaacgtcgttatgtttaacaccatttgcatcaaa |
224 |
Q |
| |
|
||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| || |||||||| ||||||| |||||| |
|
|
| T |
10239127 |
acaaagcgtatttttttgtaattgcgaaatcatgaagaaaagaaggtcttttcatggagaaaactggaacgtcattgtgtttaactccatttgaatcaaa |
10239226 |
T |
|
| Q |
225 |
acggaaataggttaaaaatggtggcataggaccgtaacggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggag |
324 |
Q |
| |
|
|||||||||||||||||| ||| | || ||||||| ||| |||| ||| ||||||||||||| ||||||||| ||||| || |||||| ||||| || |
|
|
| T |
10239227 |
acggaaataggttaaaaaaggtcgaatgagaccgtagcggtaagcgaaacattcacctgtgtcggagtcaattttaggatgcgccgtcatattcatgaag |
10239326 |
T |
|
| Q |
325 |
agtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagtt |
424 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239327 |
agtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggtgtaactttgatttcataaggaagatctgattctcctaaagcaaaaagac |
10239426 |
T |
|
| Q |
425 |
tgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtccagatatgacacgtgctgcggtgacagagccacgtgc |
524 |
Q |
| |
|
||| |||||||||||||||||||||||| || |||||||||||| ||||| || || |||| || ||||||||| | | || || |||||||| |
|
|
| T |
10239427 |
ggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgaccagttaacacacgtgctacagccacggatccacgtgc |
10239526 |
T |
|
| Q |
525 |
agcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacgg |
624 |
Q |
| |
|
|| || | |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
10239527 |
cgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacgg |
10239626 |
T |
|
| Q |
625 |
ctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttg |
724 |
Q |
| |
|
||||| ||||| ||||||||||||| |||| ||| || |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
10239627 |
ctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttg |
10239726 |
T |
|
| Q |
725 |
gtccgtttcttatgtaagcaccgttaagtgacggcgggagtgtacctttgatgatttgacattgtgttggagggagttcgtcaaggactggtgcaaagtt |
824 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || ||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239727 |
gtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtgcaaagtt |
10239826 |
T |
|
| Q |
825 |
ttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
893 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239827 |
ttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatgatgtc |
10239895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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