View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16443_low_11 (Length: 277)
Name: NF16443_low_11
Description: NF16443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16443_low_11 |
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| [»] scaffold0071 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 11439615 - 11439371
Alignment:
| Q |
22 |
agtacccactttcatcaatatcaaggattttggattggcacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagata |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11439615 |
agtacccactttcatcaatatcaaggattttggattggcacgagaattcttcaaggtgttttatcttgtcaaaaacactttcaagcccttaatacagata |
11439516 |
T |
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| Q |
122 |
tcctcttagttaccactcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaa |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11439515 |
tcctcttagttaccactcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatttcaa |
11439416 |
T |
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| Q |
222 |
tcatcctttgctcactacaaaccctcatgttcttgttcccttctt |
266 |
Q |
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||||||||| |||||| ||||||||||||||||||| |||||||| |
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| T |
11439415 |
tcatcctttactcacttcaaaccctcatgttcttgtccccttctt |
11439371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 11318035 - 11317891
Alignment:
| Q |
26 |
cccactttcatcaatatcaaggattttggattggcacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcct |
125 |
Q |
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||||||| ||||||||||||||||||||| || |||||| |||||||||||| |||||||||||| ||| | |||||||||||| |||| |||||||| |
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| T |
11318035 |
cccacttccatcaatatcaaggattttggcttaccacaaggattctccaaggtactttatcttgtcataagcaatttcaagcccttgatactgatatcct |
11317936 |
T |
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| Q |
126 |
cttagttaccactcccaaatcaggtaccacttggctcaaagcatt |
170 |
Q |
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| T |
11317935 |
catagttaccactccaaaagcaggcaccacttggcttaaagcatt |
11317891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 15460773 - 15460893
Alignment:
| Q |
146 |
caggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcctttgctcactacaaaccc |
245 |
Q |
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||||||||||||||||||||||||| | || || || | ||||| || | ||||| |||||||||| ||| ||| ||||||||||||||||| ||||| |
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| T |
15460773 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcatgataacaaccatcctttgctcactaccaaccc |
15460872 |
T |
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| Q |
246 |
tcatgttcttgttcccttctt |
266 |
Q |
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||||||||||||||| ||||| |
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| T |
15460873 |
tcatgttcttgttcctttctt |
15460893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 15460438 - 15460487
Alignment:
| Q |
73 |
caaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatat |
122 |
Q |
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| T |
15460438 |
caaggagttttatcttttcaaaagcactttcaagcccatgatacagatat |
15460487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 27504343 - 27504570
Alignment:
| Q |
30 |
ctttcatcaatatcaaggattttggattgg-cacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcctctt |
128 |
Q |
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||||||| ||||||||||||||||| ||| | ||||| |||||||||||| |||||||| ||||||| ||||||||||| || |||||||||| |||| |
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| T |
27504343 |
ctttcatgaatatcaaggattttggtttgctcccaaga-ttctccaaggtgctttatcttttcaaaagcactttcaagccattgatacagatattatctt |
27504441 |
T |
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| Q |
129 |
agttaccactcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcct |
228 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||| || |||||||| |||||||| || ||||||| |||||||||||| ||||||||| |
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| T |
27504442 |
agttacaaatcccaaatcaggtaccacttggctcaaagcattgacttttgctttgataaaccgtaacaaatatccaaatattcataa---aaatcatcct |
27504538 |
T |
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| Q |
229 |
ttgctcactacaaaccctcatgttcttgttcc |
260 |
Q |
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|| |||||| | |||||||||||||||||||| |
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| T |
27504539 |
ttactcacttccaaccctcatgttcttgttcc |
27504570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 35 - 266
Target Start/End: Complemental strand, 27499572 - 27499344
Alignment:
| Q |
35 |
atcaatatcaaggattttggattggcacaagaattctccaaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatatcctcttagttac |
134 |
Q |
| |
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|||||||||||||||||||||||| ||||| || | |||||||||||||||||||| ||| ||||||||||||| || |||||||| |||||||||| |
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| T |
27499572 |
atcaatatcaaggattttggattgccacaaaaaaatttcaaggtgttttatcttgtcagaagcactttcaagccctagattcagatatcatcttagttac |
27499473 |
T |
|
| Q |
135 |
cactcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcctttgctc |
234 |
Q |
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| |||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||| || ||||||||| ||| |||||||||||| |
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| T |
27499472 |
cgctcccaaatcaggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcataa---caaccatcctttgctc |
27499376 |
T |
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| Q |
235 |
actacaaaccctcatgttcttgttcccttctt |
266 |
Q |
| |
|
| | | || || ||| ||||||||||||||| |
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| T |
27499375 |
atttccaatccccattctcttgttcccttctt |
27499344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 1419 - 1299
Alignment:
| Q |
146 |
caggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcctttgctcactacaaaccc |
245 |
Q |
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||||||||||||||||||||||||| | || || || | ||||| || | ||||| |||||||||| ||| ||| ||||||||||||||||| ||||| |
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| T |
1419 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcatgataacaaccatcctttgctcactaccaaccc |
1320 |
T |
|
| Q |
246 |
tcatgttcttgttcccttctt |
266 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
1319 |
tcatgttcttgttcctttctt |
1299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 1754 - 1705
Alignment:
| Q |
73 |
caaggtgttttatcttgtcaaaagaactttcaagcccttaatacagatat |
122 |
Q |
| |
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||||| |||||||||| ||||||| |||||||||||| | |||||||||| |
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| T |
1754 |
caaggagttttatcttttcaaaagcactttcaagcccatgatacagatat |
1705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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