View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16443_low_3 (Length: 440)
Name: NF16443_low_3
Description: NF16443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16443_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 12626759 - 12627068
Alignment:
| Q |
18 |
accggtgagggttaaaagaatgtgggacatatatata--ccgtatgttattgcaaatatcatcaccaacctaactttagaagcatgaagatagagttatt |
115 |
Q |
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| T |
12626759 |
accggtgagggttaaaagaatgtgggacatatatatataccgtatgttattgcaaatatcatcaccgacctaactttagaagcatgaagatagagttatt |
12626858 |
T |
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| Q |
116 |
gcaaatatcattattgacctaaagtaagagacatgaagatatagttatt--aaatttctttgcgtgagaaagaaatgcaataactagaatatgggatgag |
213 |
Q |
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| T |
12626859 |
gcaaatatcattattgacctaaagtaagagacatgaagatatagttattgcaaatttctttgcgtgagaaagaaatgcaataactagaatatgggatgag |
12626958 |
T |
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| Q |
214 |
aggttggttcaattcatcaggaacttcacagaattttgatgaatagatacacgcaacatttaatggatttggcatttcagacatctaacccagctgctat |
313 |
Q |
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| T |
12626959 |
aggttggttcaattcatctgaaacttcacataattttgatgaatagatacacgcaacatttaatggaattggcatttccgacatctaacctagctgctgt |
12627058 |
T |
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| Q |
314 |
taaaaccaac |
323 |
Q |
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|||||||||| |
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| T |
12627059 |
taaaaccaac |
12627068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 12627256 - 12627313
Alignment:
| Q |
314 |
taaaaccaacttaaaattgtgtggtccatatatatgtcccgaaaagaaaacaataatg |
371 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12627256 |
taaaaccaacttaagattgagtggtccatatatatgtcccgaaaagaaaacaataatg |
12627313 |
T |
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