View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16443_low_4 (Length: 421)

Name: NF16443_low_4
Description: NF16443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16443_low_4
NF16443_low_4
[»] chr5 (4 HSPs)
chr5 (13-402)||(37184507-37184904)
chr5 (13-112)||(37889645-37889744)
chr5 (250-310)||(37889578-37889638)
chr5 (347-391)||(37889512-37889556)
[»] chr2 (3 HSPs)
chr2 (125-171)||(43150379-43150425)
chr2 (117-167)||(12542142-12542192)
chr2 (207-248)||(34236415-34236457)
[»] chr6 (1 HSPs)
chr6 (192-248)||(16266742-16266799)
[»] chr7 (7 HSPs)
chr7 (125-239)||(42951217-42951332)
chr7 (124-167)||(42951503-42951546)
chr7 (117-167)||(3292717-3292767)
chr7 (207-248)||(42951420-42951462)
chr7 (117-162)||(1382436-1382481)
chr7 (117-162)||(1388541-1388586)
chr7 (114-166)||(38974410-38974462)
[»] chr1 (2 HSPs)
chr1 (181-248)||(5108620-5108688)
chr1 (209-248)||(926618-926658)
[»] chr8 (2 HSPs)
chr8 (117-163)||(22570231-22570276)
chr8 (117-169)||(32498381-32498433)
[»] scaffold1175 (1 HSPs)
scaffold1175 (123-167)||(2343-2387)
[»] chr3 (1 HSPs)
chr3 (209-248)||(1106389-1106429)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 37184904 - 37184507
Alignment:
Q  13 aaaataacatctaggaagctctgctataacccaatttcaaaagctctactgaaacaaacaccgggcaacataacctaatttcacaaacaaaataataaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37184904 aaaataacatctaggaagctctgctataacccaatttcaaaagctctactgaaacaaacaccgggcaacataacctaatttcacaaacaaaataataaaa 37184805  T
Q  113 cggtttaaa-----tgcacttttggccccctaactttgcactagttgtgattttggcccctattnnnnnnnnn----ccacatttcaaccccccaagttt 203  Q
     ||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||| ||||||    
T  37184804 aggtttaaacgcactgcacttttggccccctaactttgcactagttgtgattttggcccctattaaaaaaaaaaaagccacatttcaaccccctaagttt 37184705  T
Q  204 catcccttttgcaatttcaattttgttcattcaaaatcaaccattgaagctgttttgtttattttcatctatctaaagctaacagataagaaatgttata 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37184704 catcccttttgcaatttcaattttgttcattcaaaatcaaccattgaagctgttttgtttattttcatctatctaaagctaacagataagaaatgttata 37184605  T
Q  304 aaatgactaacaccttatgggatatgaaaaatcaaagttgagtaaaaatggagaaaacgagagatgagaacaaattaccttgtataatgacgatgaact 402  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37184604 aaatgac-aacaccttatgggatatgaaaaatgagagttgagtaaaaatggagaaaacgagagatgagaacaaattaccttgtatgatgacgatgaact 37184507  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 37889744 - 37889645
Alignment:
Q  13 aaaataacatctaggaagctctgctataacccaatttcaaaagctctactgaaacaaacaccgggcaacataacctaatttcacaaacaaaataataaaa 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||    
T  37889744 aaaataacatctaggaagctctgctataacccaatttgaaaagctctactgaatcaaaaaccagacaacataacctaatttcacaaacaaaataataaaa 37889645  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 37889638 - 37889578
Alignment:
Q  250 aagctgttttgtttattttcatctatctaaagctaacagataagaaatgttataaaatgac 310  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||| ||||| |||||||||||    
T  37889638 aagctcttttgtttattttcatctatctaaagctatcaggtaacaaatgatataaaatgac 37889578  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 37889556 - 37889512
Alignment:
Q  347 aaaaatggagaaaacgagagatgagaacaaattaccttgtataat 391  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  37889556 aaaaatggagaaaacgagatatgaaaacaaattaccttgtataat 37889512  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 43150379 - 43150425
Alignment:
Q  125 acttttggccccctaactttgcactagttgtgattttggcccctatt 171  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||    
T  43150379 acttttggccccctaactttgcactagttgcgattttagcccctatt 43150425  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 12542142 - 12542192
Alignment:
Q  117 ttaaatgcacttttggccccctaactttgcactagttgtgattttggcccc 167  Q
    |||| |||||||||||||||||| |||| ||  ||||||||||||||||||    
T  12542142 ttaattgcacttttggccccctatcttttcaaaagttgtgattttggcccc 12542192  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 34236415 - 34236457
Alignment:
Q  207 cccttttgcaa-tttcaattttgttcattcaaaatcaaccatt 248  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  34236415 cccttttgcaactttcaattttgatcattcaaaatcaaccatt 34236457  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 16266742 - 16266799
Alignment:
Q  192 ccccccaagtttcatcccttttgcaa-tttcaattttgttcattcaaaatcaaccatt 248  Q
    ||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  16266742 ccccctaagtttcttcccttttgcaactttcaattttgatcattcaaaatcaaccatt 16266799  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 42951217 - 42951332
Alignment:
Q  125 acttttggccccctaactttgcactagttgtgattttgg-cccctattnnnnnnnnnccacatttcaaccccccaagtttcatcccttttgcaa-tttca 222  Q
    |||||||||||||||| ||||||||||||| ||| |||| ||||| ||         ||||||| |||||||| |||||||  ||||||||||| |||||    
T  42951217 acttttggccccctaagtttgcactagttgcgatattggccccctgttaaaaaaaaaccacattccaaccccctaagtttc-ccccttttgcaactttca 42951315  T
Q  223 attttgttcattcaaaa 239  Q
    |||||| ||||||||||    
T  42951316 attttgatcattcaaaa 42951332  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 42951546 - 42951503
Alignment:
Q  124 cacttttggccccctaactttgcactagttgtgattttggcccc 167  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||||    
T  42951546 cacttttggccccctaactttgcaccagttgcgattttgacccc 42951503  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 3292717 - 3292767
Alignment:
Q  117 ttaaatgcacttttggccccctaactttgcactagttgtgattttggcccc 167  Q
    ||||| ||||||||||||||||||||||||  |||||| ||||||| ||||    
T  3292717 ttaaacgcacttttggccccctaactttgccatagttgcgattttgacccc 3292767  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 42951462 - 42951420
Alignment:
Q  207 cccttttgcaa-tttcaattttgttcattcaaaatcaaccatt 248  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  42951462 cccttttgcaactttcaattttgatcattcaaaatcaaccatt 42951420  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 1382481 - 1382436
Alignment:
Q  117 ttaaatgcacttttggccccctaactttgcactagttgtgattttg 162  Q
    |||||||| |||||| | |||||||||||||||||||| |||||||    
T  1382481 ttaaatgcgcttttgcctccctaactttgcactagttgcgattttg 1382436  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 1388586 - 1388541
Alignment:
Q  117 ttaaatgcacttttggccccctaactttgcactagttgtgattttg 162  Q
    |||||||| |||||| | |||||||||||||||||||| |||||||    
T  1388586 ttaaatgcgcttttgcctccctaactttgcactagttgcgattttg 1388541  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 38974410 - 38974462
Alignment:
Q  114 ggtttaaatgcacttttggccccctaactttgcactagttgtgattttggccc 166  Q
    ||||||| |||| ||||||||||||| |||| ||  |||||||||||||||||    
T  38974410 ggtttaattgcatttttggccccctatcttttcaaaagttgtgattttggccc 38974462  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 5108688 - 5108620
Alignment:
Q  181 ccacatttcaaccccccaagtttcatcccttttgcaa-tttcaattttgttcattcaaaatcaaccatt 248  Q
    ||||||||||  |||| ||||||| | |||||||||| ||||||||||| ||||||| |||||||||||    
T  5108688 ccacatttcagtcccctaagtttccttccttttgcaactttcaattttgatcattcataatcaaccatt 5108620  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 926658 - 926618
Alignment:
Q  209 cttttgcaa-tttcaattttgttcattcaaaatcaaccatt 248  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  926658 cttttgcaactttcaattttgatcattcaaaatcaaccatt 926618  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 22570276 - 22570231
Alignment:
Q  117 ttaaatgcacttttggccccctaactttgcactagttgtgattttgg 163  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  22570276 ttaaatgcacttttgacccc-taactttgcactagttgcgattttgg 22570231  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 32498381 - 32498433
Alignment:
Q  117 ttaaatgcacttttggccccctaactttgcactagttgtgattttggccccta 169  Q
    |||| |||||||||||||||||| |||| ||  ||||| ||||||||||||||    
T  32498381 ttaattgcacttttggccccctatcttttcaaaagttgcgattttggccccta 32498433  T

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Target: scaffold1175 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1175
Description:

Target: scaffold1175; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 2387 - 2343
Alignment:
Q  123 gcacttttggccccctaactttgcactagttgtgattttggcccc 167  Q
    ||||||||||||||| ||||||||  |||||| ||||||||||||    
T  2387 gcacttttggcccccaaactttgccatagttgcgattttggcccc 2343  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 1106389 - 1106429
Alignment:
Q  209 cttttgcaa-tttcaattttgttcattcaaaatcaaccatt 248  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  1106389 cttttgcaactttcaattttgttcattcaaaatcaatcatt 1106429  T

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