View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16443_low_5 (Length: 412)
Name: NF16443_low_5
Description: NF16443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16443_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 395
Target Start/End: Complemental strand, 24300791 - 24300412
Alignment:
| Q |
14 |
cagagacatccagcggaagctcaccaaacatactattcttaaagcggtttagtgatccaacatctaccaccgatgggcaactcaagaaatcaacccatct |
113 |
Q |
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| T |
24300791 |
cagagacatccagccgaagctcaccaaacatactattcttaaagcggtttagtgatccaacatctaccaccgatgggcaactcaagaaatcaacccatct |
24300692 |
T |
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| Q |
114 |
ctaaagtgggctctaccctgtaggccgaggaaggctatttcaatgaatttcaatgacataataaattgatcaaaggaaggatacaattacaaaaaagttt |
213 |
Q |
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| T |
24300691 |
ctaaagtgggctttaccctgtaggccgaggaaggctatttcaatgaatttcaatgacataataaattgatcaaaggaaggatacaattac--aaaagttt |
24300594 |
T |
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| Q |
214 |
ttataaaaccgccatttgaaattctttgtacttgtttccaagtccttttgaaatttgataaactttttcgccatttgaaattggtttcctccaaggatat |
313 |
Q |
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| T |
24300593 |
ttataaaaccgccatttgaaattctttgtacttgtttccaagtccttttgaaatttgaaaaactttttcgccatttgaaattggtttcctccaaggatat |
24300494 |
T |
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| Q |
314 |
actcccctttgttatagcatagactttattttttagttgggctttacctccttcaatgctaagaatttcttcttttatgttt |
395 |
Q |
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| T |
24300493 |
actcccctttgttatagcatagactttattttttagttgggctttaccaccttcaatgctaagaatttcttcttttatgttt |
24300412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 24241667 - 24241703
Alignment:
| Q |
36 |
accaaacatactattcttaaagcggtttagtgatcca |
72 |
Q |
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| T |
24241667 |
accaaacatactattcttaaagcggtttggtgatcca |
24241703 |
T |
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