View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16443_low_6 (Length: 372)
Name: NF16443_low_6
Description: NF16443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16443_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 3724068 - 3724406
Alignment:
| Q |
16 |
atgaataacatattttaaagggactaaagttaaaatactttgactttttaaaataataaaaatattcaacttaatgctacaaataataatatttgctcca |
115 |
Q |
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| T |
3724068 |
atgaataacatcttttatagggactgaagttaaaatacttcgactttttaaaataataaaaatattcaacttaatgctacaaataataatatttgctcca |
3724167 |
T |
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| Q |
116 |
aaatgagcattattgagtatagaaaaactttgaaaagcaatgatttgtcgatgaaattattctaaaattgtatttgtttttcaaccaacatgttgaataa |
215 |
Q |
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| T |
3724168 |
aaatgagcattattgagtatagaaaaactttgaaaagcaatgatttgtcgatgaaattattctaaaattgtatttgtttttcaaccaacatgttgaataa |
3724267 |
T |
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| Q |
216 |
gttggtgaaaggtaaaattgttctctacgaatgaagtcaagaagcctcattggccttgaaagttggtgttatcagtgtcttgatacaaggtctcgaactc |
315 |
Q |
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| T |
3724268 |
gttggtgaaaggtaaaattgttttctacgaatgaagtcaagaagcctcattggccttgtaagttggtgttatcagtgtcttgatacaaggtctcgaactc |
3724367 |
T |
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| Q |
316 |
atacatattcaaaaaattcataccctctgcgtactagtt |
354 |
Q |
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| T |
3724368 |
atacatattcaaaaaattcataccctctgcctactagtt |
3724406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 3725944 - 3726213
Alignment:
| Q |
19 |
aataacatattttaaagggactaaagttaaaatactttgactttttaaaataataaaaatattcaacttaatgctacaaataataatatttgctccaaaa |
118 |
Q |
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| T |
3725944 |
aataacaccttttatagagactgaagttaaaataccttgattttttagaacattaaaaatattcagcttagtgcttcaaatgataatatttgctctataa |
3726043 |
T |
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| Q |
119 |
tgagcattattgagtatagaaaaactttgaaaagcaatgatttgtcgatgaaattattctaaaattgtatttgtttttcaaccaacatgttga---ataa |
215 |
Q |
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| T |
3726044 |
tgagcatt-tcgagtagagaaaaactttgaaaatcaattatttgttagcaaaattattctaaaattgtatgtgtcgctctaccaacgcgttgaatgataa |
3726142 |
T |
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| Q |
216 |
gttggtgaaaggtaaaattgttctctacgaatgaagtcaagaagcctcattggccttgaaagttggtgtta |
286 |
Q |
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|||| |||| ||||||||||||||||| ||| ||||| ||||||| | | ||| |||||||||||| |||| |
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| T |
3726143 |
gttgatgaagggtaaaattgttctctatgaaggaagtgaagaagctttagtggtcttgaaagttggggtta |
3726213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 3721481 - 3721563
Alignment:
| Q |
75 |
aaatattcaacttaatgctacaaataataatatttgctccaaaatgagcattattgagtatag-aaaaactttgaaaagcaat |
156 |
Q |
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||||||| |||||||||||| |||||||||| ||||||||||||| || || | ||| || || |||||||||||||| |||| |
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| T |
3721481 |
aaatatttaacttaatgctaaaaataataatctttgctccaaaattagaataactgaatagagaaaaaactttgaaaatcaat |
3721563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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