View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16443_low_9 (Length: 291)
Name: NF16443_low_9
Description: NF16443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16443_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 29643799 - 29643533
Alignment:
| Q |
1 |
tatagcaatcttacgttggaaaagaaacaagacaaacacagattgatatatttgtaggcctataatggttttgatttacatcactaagatcagagtgact |
100 |
Q |
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| T |
29643799 |
tatagcaatcttacgttggaaaagaaacaagacaaacacagattgatatatttgtaggcctataatggttttgatttacatcactaagatcagagtgact |
29643700 |
T |
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| Q |
101 |
cagttcattctcattaacttcaaaaattgcagaagctgttaagacttaagatattaaatgagagcatatttacttttcacattatacagtgttttaacaa |
200 |
Q |
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| T |
29643699 |
cagttcattctcattaacttcaaaaattgcagaagctgttaagacttaagatattaaatgagagcatatttacttttcacattatacagtgttttaacaa |
29643600 |
T |
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| Q |
201 |
cttgagaagggaaatgtttcaatagaaatctttagaagtagaagccatgttatattctcttgatgct |
267 |
Q |
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| T |
29643599 |
cttgagaagggaaatttttcaatagaaatctttagaagtagaagccatgttatattctcttgatgct |
29643533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 29648873 - 29648752
Alignment:
| Q |
146 |
ttaagatattaaatgagagcatatttacttttcacattatacagtgttttaacaacttgagaagggaaatgtttcaatagaaatctttagaagtagaagc |
245 |
Q |
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| T |
29648873 |
ttaagatattaaatgagagcatatgtacttttcacattatacagtgttttaacaacttgagaaggcaaatgtttcaatagaaatctttagaagtagaagc |
29648774 |
T |
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| Q |
246 |
catgttatattctcttgatgct |
267 |
Q |
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| T |
29648773 |
catgttatattctcttgatgct |
29648752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29649753 - 29649660
Alignment:
| Q |
1 |
tatagcaatcttacgttggaaaagaaacaagacaaacacagattgatatatttgtaggcctataatggttttgatttacatcactaagatcaga |
94 |
Q |
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||||||||||||| ||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29649753 |
tatagcaatcttatattgaaaaagaaacaagacaaacacagtttaatatatttgtatgcctataatggttttgatttacatcactaagatcaga |
29649660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 19820270 - 19820230
Alignment:
| Q |
226 |
aaatctttagaagtagaagccatgttatattctcttgatgc |
266 |
Q |
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| T |
19820270 |
aaatctttacaagtagaagccatgatatattctcttgatgc |
19820230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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