View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_high_18 (Length: 238)
Name: NF16444_high_18
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 40190296 - 40190075
Alignment:
| Q |
17 |
aaaaactagcaaagattttttaccttcttaaatgagcaacatattcctgtcttgtcatattcttcatttcctcaagttgattttgataattttccaactg |
116 |
Q |
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| T |
40190296 |
aaaaactagcaaagattttttaccttcttaaatgagcaacatattcctgtcttgtcatattcttcatttcctcaagttgattttgataattttccaactg |
40190197 |
T |
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| Q |
117 |
tttataagagaatgtaattnnnnnnnntaaatattaccttttaaatggaattgaaacaaaagacagacattcaaactaatgattgttattactaacaggg |
216 |
Q |
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| T |
40190196 |
tttataagagaatgtaattaaaaaaaaaaaatattaccttttaaatggaattgaaacaaaagacagacattcaaactaatgattgttattactaacaggg |
40190097 |
T |
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| Q |
217 |
aagtttatgtgagtagatggtc |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
40190096 |
aagtttatgtgagtagatggtc |
40190075 |
T |
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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 5177931 - 5178009
Alignment:
| Q |
37 |
taccttcttaaatgagcaacatattcctgtcttgtcatattcttcatttcctcaagttgattttgataattttccaact |
115 |
Q |
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| T |
5177931 |
taccttcttaaatgagcaacgtattctagtctagtcattttcttcatttcctcaagttccttttgataattttccaact |
5178009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 47753685 - 47753626
Alignment:
| Q |
37 |
taccttcttaaatgagcaacatattcctgtcttgtcatattcttcatttcctcaagttga |
96 |
Q |
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| T |
47753685 |
taccttctcaaatgtgcaacatattcctgccttgtcatattcttcatttcctcaagttga |
47753626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 4846348 - 4846421
Alignment:
| Q |
37 |
taccttcttaaatgagcaacatattcctgtcttgtcatattcttcatttcctcaagttgattttgataattttc |
110 |
Q |
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|||||||| |||||||||||||||||||| || |||| || |||||||| ||||||| |||||| ||| |||| |
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| T |
4846348 |
taccttctcaaatgagcaacatattcctgcctattcatgttattcatttcttcaagttcattttggtaaatttc |
4846421 |
T |
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