View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_high_22 (Length: 217)
Name: NF16444_high_22
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_high_22 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 45144454 - 45144232
Alignment:
| Q |
1 |
aatcattaactcttgggaactcatggaaggcctcgacaccgaaagcttccgcttctcacccctaactccaccatcatcaaaaccctctcacaaagaaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144454 |
aatcattaactcttgggaactcatggaaggcctagacaccgaaagcttccgcttctcacccctaactccaccatcatcaaaaccctctcacaaagaaaac |
45144355 |
T |
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| Q |
101 |
accaacccaaacctaaatctaaaccta------aaccctgctttgaaaaaacccggttcgacgctttcggatcggtttgagaggatatgtccaccaaacg |
194 |
Q |
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||||| ||||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144354 |
accaatccaaacctaaacctaaacctaaacctaaaccctgctttgaaaaaacctggttggacgctttcggatcggtttgagaggatatgtccaccaaacg |
45144255 |
T |
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| Q |
195 |
gagagaagaaagtggtgatctat |
217 |
Q |
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||||||||||||||||||||||| |
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| T |
45144254 |
gagagaagaaagtggtgatctat |
45144232 |
T |
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