View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_high_4 (Length: 543)
Name: NF16444_high_4
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_high_4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 20 - 543
Target Start/End: Complemental strand, 9684020 - 9683497
Alignment:
| Q |
20 |
tacattgcagccgcagttgcagattgcaatttagaactatgctatggattttaatacatcttcattcatttcttcaaatatannnnnnnnnnnnnnnngt |
119 |
Q |
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| T |
9684020 |
tacattgtggccgcagttgcagattgcaatttagaactatgctatggattttaatacatcttcattcatttcttcaaatatattttttcgacttttttgt |
9683921 |
T |
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| Q |
120 |
ggatgattaaattttcactccttgaaatttcaggactaatggagaaacaagcatcaatgtttgacaagactatgatctaaagctttcgacattttagtaa |
219 |
Q |
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| T |
9683920 |
ggatgattaaattttcactccttgaaatttcaggactaatggagaaacaagcatcaatgtttgacaagactatgatctaaagcttttgacattttagtaa |
9683821 |
T |
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| Q |
220 |
actcttttcatatattgtctgtttcatgctttaacataccaatggaaaataagctccatccaaaagtgattctggttttacttacaattttcctttcaac |
319 |
Q |
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| T |
9683820 |
actcttttcatatattgtctgtttcatgctttaacataccaatggaaaataagctccatccaaaagtgattctggttttacttacaattttcctttcaac |
9683721 |
T |
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| Q |
320 |
ttctcactcaactgaacttcaatcctctcacactcacactcttttgcgaatcaaacgcctattaaactttccttcggttttaagcagttggaattccaac |
419 |
Q |
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| T |
9683720 |
ttctcactcaactgaacttcaatcctctcacactcacactcttttgcgaatcaaacgcctattaaactttccttcggttttaagcagttggaattccaac |
9683621 |
T |
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| Q |
420 |
actgatttttgcaacacagattcaaaagcttctcaaactgttgtatgctatggagaagccataactcagctacacatagttggtgaaacaacaaaacctc |
519 |
Q |
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| T |
9683620 |
actgatttttgcaacacagattcaaaagcttctcaaactgttgtatgctatggagaagccataactcagctacacatagttggtgaaacaacaaaacctc |
9683521 |
T |
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| Q |
520 |
aacaaattattccaaaaaacttct |
543 |
Q |
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| T |
9683520 |
aacaaattcttccaaaaaacttct |
9683497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 523
Target Start/End: Original strand, 29858147 - 29858234
Alignment:
| Q |
431 |
caacacagattcaaaagcttctcaaactgttgtatgctatggagaagccataactcagctacacatagttggtgaaacaacaaaacctcaaca |
523 |
Q |
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| T |
29858147 |
caacacagtttcaaaagtttctcgaactgttgtatgctatgaagaaaccataactcaggtac-----gttggcgaaactacaaaacctcaaca |
29858234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 506
Target Start/End: Original strand, 33543547 - 33543666
Alignment:
| Q |
387 |
tttccttcggttttaagcagttggaattccaacactgatttttgcaacacagattcaaaagcttctcaaactgttgtatgctatggagaagccataactc |
486 |
Q |
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| T |
33543547 |
tttccttcagctttaagcaattggaataactccacagatttttgcaacacagattcaaactcttcgctcactgtagtatgctatgaagacacaataactc |
33543646 |
T |
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| Q |
487 |
agctacacatagttggtgaa |
506 |
Q |
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| T |
33543647 |
aacttcacataataggtgaa |
33543666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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