View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_high_7 (Length: 444)
Name: NF16444_high_7
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Original strand, 45887701 - 45888125
Alignment:
| Q |
6 |
agcagcagagaccatagaatcgtcactttcatcatcttctggatcagcttgatgagtagttccttcatcatccatgatgttatcaatatctccatcatta |
105 |
Q |
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|||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45887701 |
agcatcagaaaccatagaatcatcactttcatcatcttctggatcagcttgatgagtagttccttcatcatccatgatgttatcaatatctccatcatta |
45887800 |
T |
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| Q |
106 |
tcatcttctatgtgggacccaatatacatggtccatccagattcactgctttcacattcctcttcacttccaaagattttggatggtttcatcctaaagg |
205 |
Q |
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| T |
45887801 |
tcatcttctatgtgggacccaatatacatggtccatcccgattcactgctttcacattcctcttcacttccaaagattttggatggtttcatcctaaagg |
45887900 |
T |
|
| Q |
206 |
caacaacaaggagaatggttaacaaaagaagatagaaagaagaaacagtatatctctcttaaataggaaaacaacaacaaatgtttgttttgttccgacc |
305 |
Q |
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| T |
45887901 |
caacaacaaggagaatggttaacaaaagaagatagaaagaagaaacagtatatctctcttaaataggaaaacaacaacaaatgtttgttttgttccgacc |
45888000 |
T |
|
| Q |
306 |
gacgctgctgctgctttttcgaggtattgtctgtttcgagtcttatgtgaaccctcttgtcaacttcggtatgttgagtagagttaatatttataaaata |
405 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45888001 |
gacgctgctactgctttttcgaggtattgtctgtttcgagtcttatgtgaaccctcttgtcaacttcggtatgttgagtagagttaatatttacaaaata |
45888100 |
T |
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| Q |
406 |
ttctcggtatgtgaaccctcctttt |
430 |
Q |
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| T |
45888101 |
ttctcggtatgtgaatcctcttttt |
45888125 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 24309554 - 24309504
Alignment:
| Q |
124 |
ccaatatacatggtccatccagattcactgctttcacattcctcttcactt |
174 |
Q |
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| T |
24309554 |
ccaatatacatggtccatccagattcactactatgacattcctcttcactt |
24309504 |
T |
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