View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_low_10 (Length: 397)
Name: NF16444_low_10
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 76 - 380
Target Start/End: Original strand, 8385005 - 8385309
Alignment:
| Q |
76 |
tacatgtatctggtctaaatgtgacctatgaccaaatacatgtacttttggcctagatatacgtaattttttgcttatatttcattccagtatggtggaa |
175 |
Q |
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| T |
8385005 |
tacatgtatctgatctaaatgtgacctatgaccaaatacatgtacttttggtctagatgtacgtaattttttgcttatatttcattccagaatggttgaa |
8385104 |
T |
|
| Q |
176 |
tatctgtctacctatcaacgtttataagtcataaatgatttgagtgaaaagtagataatgtgaacaaactaactattaatatttgtcgttnnnnnnnntg |
275 |
Q |
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| T |
8385105 |
tatctgtctacctatcaacgtttataagtcataaatgatttgagtgaaaagtaaataatgtgaacaaactaactattaatatttgtcgttaaaaaaaatg |
8385204 |
T |
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| Q |
276 |
ttacctgattggttatggcggaacttatgagtgttttaagatcatcagcatgttgataaagtgtctttttactcgggtatagtacaagatcattttgtgc |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8385205 |
ttacctgattggttatggcggaacttatgagtgttttaagatcatcagcatgttgataaagtgtctttttactcgggtatagtacaagatcattttgtgc |
8385304 |
T |
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| Q |
376 |
ttctt |
380 |
Q |
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||||| |
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| T |
8385305 |
ttctt |
8385309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 8384909 - 8384959
Alignment:
| Q |
15 |
cacagacaattgattagagactaaaactactccctctgtaacaaaatataa |
65 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8384909 |
cacagacaattgatgagagactaaaactactccctctgtaacaaaatataa |
8384959 |
T |
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