View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16444_low_11 (Length: 367)
Name: NF16444_low_11
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_low_11 |
 | |
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| [»] chr1 (12 HSPs) |
| |
|
| [»] scaffold0400 (2 HSPs) |
| |
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| [»] scaffold0365 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 15010642 - 15011008
Alignment:
| Q |
1 |
ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt |
100 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010642 |
ccagaactaggaagtgcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt |
15010741 |
T |
|
| Q |
101 |
tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010742 |
tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt |
15010841 |
T |
|
| Q |
201 |
gagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15010842 |
gagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgttgagtttggc |
15010941 |
T |
|
| Q |
301 |
caattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15010942 |
caattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgc |
15011008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 15001749 - 15002115
Alignment:
| Q |
1 |
ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15001749 |
ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgcgaaaaattccaaaggagttagaaaacttatctttgttga |
15001848 |
T |
|
| Q |
101 |
tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15001849 |
tcaaactctcgttaagtaacaatcatctttatggagaagttccagtacaaattgcatcattgcatcaactaactgcattggagcttgcaacaaataattt |
15001948 |
T |
|
| Q |
201 |
gagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggc |
300 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15001949 |
gagtggattcatccctgaaaaacttggtatgttgtctatgttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgttgagtttggc |
15002048 |
T |
|
| Q |
301 |
caattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15002049 |
caattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgc |
15002115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 15036662 - 15037028
Alignment:
| Q |
1 |
ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
15036662 |
ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaacgatctaatgggaaaaattccaaaggagctaaaatatttatctttgttgt |
15036761 |
T |
|
| Q |
101 |
tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
15036762 |
tcaaactctcgttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaacaaataactt |
15036861 |
T |
|
| Q |
201 |
gagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggc |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
15036862 |
aagtggcttcatcctggaaaaacttggtatgttgtctaggttattgcagttgaatttgagccataataagcttgaggggaacattcctgttgagtttggc |
15036961 |
T |
|
| Q |
301 |
caattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15036962 |
caattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgc |
15037028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 15024759 - 15025125
Alignment:
| Q |
1 |
ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt |
100 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
15024759 |
ccagagctaggcagcgcaacaaatttacaggagcttaacttgtcttcaaaccatctaacgggaaaaattccaaaggagctagaaaacttatctttgttga |
15024858 |
T |
|
| Q |
101 |
tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt |
200 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
15024859 |
tcaaactctcgttaagtaacaatcacctttctggagaagttcctgtacaaattgcatcattgcacgagctaactgcattggagcttgcaacaaataattt |
15024958 |
T |
|
| Q |
201 |
gagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggc |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| | |
|
|
| T |
15024959 |
gagtggcttcatccctaaaagacttggtaggttatctaggttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgctgagtttgcc |
15025058 |
T |
|
| Q |
301 |
caattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15025059 |
caattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgc |
15025125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 15032100 - 15032466
Alignment:
| Q |
1 |
ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt |
100 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
15032100 |
ccagagctaggcagcgcaacaaatttacaggagcttaacttgtcttcaaaccatctaacgggaaaaattccaaaggagctagaaaacttatctttgttga |
15032199 |
T |
|
| Q |
101 |
tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt |
200 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
15032200 |
tcaaactctcgttaagtaacaatcacctttctggagaagttcctgtacaaattgcatcattgcacgagctaactgcattggagcttgcaacaaataattt |
15032299 |
T |
|
| Q |
201 |
gagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggc |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| | |
|
|
| T |
15032300 |
gagtggcttcatccctaaaagacttggtaggttatctaggttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgctgagtttgcc |
15032399 |
T |
|
| Q |
301 |
caattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15032400 |
caattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgc |
15032466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 15016757 - 15017123
Alignment:
| Q |
1 |
ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
15016757 |
ccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagctagaaaacttatctttgttga |
15016856 |
T |
|
| Q |
101 |
tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
15016857 |
tcaaactctcgttaagtaacaatcatctttctggagaagttcctgaacaaattgaatcattgcacgaattaactgcattggagcttgcagcaaataattt |
15016956 |
T |
|
| Q |
201 |
gagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggc |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15016957 |
cagtggcttcatccctgaaaaacttggtatgttgtctaggttattgaagttaaatttgagccaaaataagtttgaggggaacattcctgttgagtttggc |
15017056 |
T |
|
| Q |
301 |
caattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15017057 |
caattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgc |
15017123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 22 - 366
Target Start/End: Original strand, 14503645 - 14503989
Alignment:
| Q |
22 |
aatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttcaaactctccttaagtaaca |
121 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||| | ||||||||||||||||| ||| | |||| ||||||||| |||||||||| ||||||||| |
|
|
| T |
14503645 |
aatttacatgaacttaacttgtcatcaaaccatcttactggaaaaattccaaaggatctaggaaacttgtctttgttgatcaaactctcgataagtaaca |
14503744 |
T |
|
| Q |
122 |
atcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaa |
221 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||| ||||||| | ||||||||||||| ||||||||| |||||||||||||||| || |
|
|
| T |
14503745 |
atcatctttctggagaggttcctatacaaattgcatcattgcaagcactaactaccttggagcttgcaacaaataatttaagtggcttcatccctagaag |
14503844 |
T |
|
| Q |
222 |
acttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaac |
321 |
Q |
| |
|
|||||| | ||||||| |||| | || |||||||||||||||||||||||| | || |||||||| ||||||||||||| ||| |||||||||||| | |
|
|
| T |
14503845 |
acttggaaggttgtctgagttaatacatttgaatttgagccaaaataagtttgaaggaaacattcccgttgagtttggccgattaaatgttattgaagat |
14503944 |
T |
|
| Q |
322 |
cttgatcttagtgggaattctatgaatggaaccataccatcaatg |
366 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||| ||||| |||||| |
|
|
| T |
14503945 |
cttgatctcagtggaaattttatgaatggaacgataccttcaatg |
14503989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 14467445 - 14467810
Alignment:
| Q |
1 |
ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| || || ||| |||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
14467445 |
ccagaactaggccgagcaacaaatttacatgaactaaacctgtcttcaaaccatcttacgggaaaaattccaaaggagctagaaagcttatctttgttga |
14467544 |
T |
|
| Q |
101 |
tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt |
200 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||| | | ||||||||| ||| ||||||||| |
|
|
| T |
14467545 |
tccaactctcggtaagtaacaatcatctttcaggagaagttcctgcacaagttgcatcattgcaaaaactagataccttggagctttcaacaaataattt |
14467644 |
T |
|
| Q |
201 |
gagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggc |
300 |
Q |
| |
|
||||| | ||||| ||| ||||||| | ||||| |||||||| || |||||||| ||| |||||| |||| | || ||||||||||| ||||||||| |
|
|
| T |
14467645 |
aagtggttcaatcccaaaacaacttggaagtttgtcaatgttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcgagtttggc |
14467744 |
T |
|
| Q |
301 |
caattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatg |
366 |
Q |
| |
|
||||| |||||| ||||| | ||||||||||||| ||||| | |||| |||||||| ||| ||||| |
|
|
| T |
14467745 |
caattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatg |
14467810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 38 - 367
Target Start/End: Complemental strand, 14523057 - 14522728
Alignment:
| Q |
38 |
acttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttcaaactctccttaagtaacaatcatctttctggaga |
137 |
Q |
| |
|
||||||| ||||| || || || ||||||||||||||||| ||| | |||||||| || || ||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
14523057 |
acttgtcctcaaatcaacttataggaaaaattccaaaggatctaggaaacttatctgcactgatccaactctcgataagtaataatcatctttcgggaga |
14522958 |
T |
|
| Q |
138 |
agttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgttgtct |
237 |
Q |
| |
|
||||||| | || ||||||||||||||| |||||||| ||||||| ||||||| ||||||||| ||||| || |||||| |||||||||| | ||||||| |
|
|
| T |
14522957 |
agttcctatgcagattgcatcattgcatgaactaactacattggatcttgcaacaaataatttaagtggttttatccctgaaaaacttggaaggttgtct |
14522858 |
T |
|
| Q |
238 |
atgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtggga |
337 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| | || |||||||||||||| |||| |||||||||||||||||| | ||||||||||| |||| |
|
|
| T |
14522857 |
aggttattgcagttgaatttgagccaaaataagtttgaaggaaacattcctgttgaacttggtcaattgaatgttattgaagatcttgatcttagcggga |
14522758 |
T |
|
| Q |
338 |
attctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
||| | ||||||||||||||||| |||||| |
|
|
| T |
14522757 |
attttttgaatggaaccataccaacaatgc |
14522728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 367
Target Start/End: Complemental strand, 14533213 - 14532849
Alignment:
| Q |
3 |
agaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttc |
102 |
Q |
| |
|
||||||||| |||||||| | ||||| || ||||| |||||||||||||||| | |||||||||||| ||||| ||| | ||||||||||||| || |
|
|
| T |
14533213 |
agaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccagaggagctaggaaacttatctttgttaatc |
14533114 |
T |
|
| Q |
103 |
aaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttga |
202 |
Q |
| |
|
|||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||| || ||||||||| | |
|
|
| T |
14533113 |
aaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgccttggagcttgaaaaaaataatttaa |
14533014 |
T |
|
| Q |
203 |
gtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggcca |
302 |
Q |
| |
|
||||||||||||||| || |||||| | ||||||| |||| | || ||||||||||||||||||||||| | || ||||||||||||||||||| ||| |
|
|
| T |
14533013 |
gtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataagttcgaaggaaacattcctgttgagtttgacca |
14532914 |
T |
|
| Q |
303 |
attgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
||| || ||||||||| | ||||||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
14532913 |
attaaaggttattgaagatcttgatcttagtgaaaatgttatgagtggaaccataccatcaatgc |
14532849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 136 - 367
Target Start/End: Original strand, 15040536 - 15040767
Alignment:
| Q |
136 |
gaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgttgt |
235 |
Q |
| |
|
|||||||||||||||||||| |||||| | || | || |||||||| |||| ||||||||| ||||||||| |||| ||| ||||||| | || | |
|
|
| T |
15040536 |
gaagttcctgtacaaattgcctcattgaaggaagttgctatcttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattat |
15040635 |
T |
|
| Q |
236 |
ctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgg |
335 |
Q |
| |
|
|||||||||| || || ||| ||||||||||||||||| | || |||||||||| |||| |||| || || || ||||||||||| |||||||||||||| |
|
|
| T |
15040636 |
ctatgttattacacttaaatatgagccaaaataagtttgaaggaaacattcctgatgagattggacagttaaaagttattgaaaatcttgatcttagtgg |
15040735 |
T |
|
| Q |
336 |
gaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| |
|
|
| T |
15040736 |
gaattctttgaatggaaccataccaacaatgc |
15040767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 366
Target Start/End: Original strand, 14481837 - 14481992
Alignment:
| Q |
211 |
atccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggccaattgaatg |
310 |
Q |
| |
|
||||| ||| ||||||| | ||||| |||||||| || |||||||| ||| |||||| |||| | || ||||||||||| |||||||||||||| |||| |
|
|
| T |
14481837 |
atcccaaaacaacttggaagtttgtcaatgttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcgagtttggccaattaaatg |
14481936 |
T |
|
| Q |
311 |
ttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatg |
366 |
Q |
| |
|
|| ||||| | ||||||||||||| ||||| | |||| |||||||| ||| ||||| |
|
|
| T |
14481937 |
ttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatg |
14481992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 12423 - 12787
Alignment:
| Q |
3 |
agaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttc |
102 |
Q |
| |
|
||||||||| |||||||| | ||||| || ||||| |||||||||||||||| | |||||||||||||||||| ||| | ||||||||||||| || |
|
|
| T |
12423 |
agaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccaaaggagctaggaaacttatctttgttaatc |
12522 |
T |
|
| Q |
103 |
aaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttga |
202 |
Q |
| |
|
|||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||| || ||||||||| | |
|
|
| T |
12523 |
aaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgccttggagcttgaaaaaaataatttaa |
12622 |
T |
|
| Q |
203 |
gtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggcca |
302 |
Q |
| |
|
||||||||||||||| || |||||| | ||||||| |||| | || ||||||||||||||||||| |||| | || |||||||| ||||||||||||| |
|
|
| T |
12623 |
gtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataggtttgaaggaaacattcccattgagtttggcca |
12722 |
T |
|
| Q |
303 |
attgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
||| | ||||||||| | ||||| |||||||| |||| | |||| ||||||||||||||||||| |
|
|
| T |
12723 |
attagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgc |
12787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 113 - 367
Target Start/End: Original strand, 6245 - 6499
Alignment:
| Q |
113 |
taagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcat |
212 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| ||||||||||| ||||||| || ||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
6245 |
taagtagcaatcatcttgtaggagaagttcctgaacaaattgcattattgcataaaataactatcttggagcttgcaacaaataatttcagtggcttcat |
6344 |
T |
|
| Q |
213 |
ccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggccaattgaatgtt |
312 |
Q |
| |
|
||| || ||||||| | || ||| |||||| | |||||||||||||||||||||||| | || ||||||||| ||||||||| |||||||| || |
|
|
| T |
6345 |
cccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtttgaaggagacattcctgctgagtttggacaattgaaaatt |
6444 |
T |
|
| Q |
313 |
attgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
|||||||| ||||||||||| | |||| | ||||||||||||||||| |||||| |
|
|
| T |
6445 |
attgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgc |
6499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 13066 - 13430
Alignment:
| Q |
3 |
agaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttc |
102 |
Q |
| |
|
||||||||| |||||||| | ||||| || ||||| |||||||||||||||| | |||||||||||||||||| ||| | ||||||||||||| || |
|
|
| T |
13066 |
agaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccaaaggagctaggaaacttatctttgttaatc |
13165 |
T |
|
| Q |
103 |
aaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttga |
202 |
Q |
| |
|
|||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||| || ||||||||| | |
|
|
| T |
13166 |
aaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgccttggagcttgaaaaaaataatttaa |
13265 |
T |
|
| Q |
203 |
gtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggcca |
302 |
Q |
| |
|
||||||||||||||| || |||||| | ||||||| |||| | || ||||||||||||||||||| |||| | || |||||||| ||||||||||||| |
|
|
| T |
13266 |
gtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataggtttgaaggaaacattcccattgagtttggcca |
13365 |
T |
|
| Q |
303 |
attgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
||| | ||||||||| | ||||| |||||||| |||| | |||| ||||||||||||||||||| |
|
|
| T |
13366 |
attagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgc |
13430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 113 - 367
Target Start/End: Original strand, 6889 - 7143
Alignment:
| Q |
113 |
taagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcat |
212 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| ||||||||||| ||||||| || ||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
6889 |
taagtagcaatcatcttgtaggagaagttcctgaacaaattgcattattgcataaaataactatcttggagcttgcaacaaataatttcagtggcttcat |
6988 |
T |
|
| Q |
213 |
ccctaaaaaacttggtatgttgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggccaattgaatgtt |
312 |
Q |
| |
|
||| || ||||||| | || ||| |||||| | |||||||||||||||||||||||| | || ||||||||| ||||||||| |||||||| || |
|
|
| T |
6989 |
cccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtttgaaggagacattcctgctgagtttggacaattgaaaatt |
7088 |
T |
|
| Q |
313 |
attgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
|||||||| ||||||||||| | |||| | ||||||||||||||||| |||||| |
|
|
| T |
7089 |
attgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgc |
7143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 17848423 - 17848512
Alignment:
| Q |
251 |
tgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaatt |
340 |
Q |
| |
|
||||||||||||| || || ||||| || || ||||||||||||||||||||||| || || || ||| ||||||||||||||||||| |
|
|
| T |
17848423 |
tgaatttgagccataacaaatttaaaggaaatattcctgttgagtttggccaatttaaagtccttcaaagtcttgatcttagtgggaatt |
17848512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 15677515 - 15677392
Alignment:
| Q |
38 |
acttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttcaaactctccttaagtaacaatcatctttctggaga |
137 |
Q |
| |
|
|||| |||||||||||||| || || ||||||||||||||||||| |||| || ||||| | ||||| ||||| ||||| ||||||||||| | |
|
|
| T |
15677515 |
acttatcttcaaaccatcttattggtaaaattccaaaggagttaggcaacttgactatgttgggtagactctatttaagcaacaaccatctttctggtaa |
15677416 |
T |
|
| Q |
138 |
agttcctgtacaaattgcatcatt |
161 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
15677415 |
tgttccggtacaaattgcatcatt |
15677392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 367
Target Start/End: Original strand, 14605822 - 14605906
Alignment:
| Q |
283 |
attcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||| |||||| ||| ||||| ||||| |||| | || ||||||| ||||||||||||| |
|
|
| T |
14605822 |
attcctattgaatttggacaatttaatgtccttgaaatcctagatctcagtggaaattttttggatggaacaataccatcaatgc |
14605906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 367
Target Start/End: Original strand, 16024999 - 16025083
Alignment:
| Q |
283 |
attcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccatcaatgc |
367 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||| |||||| ||| ||||| ||||| |||| | || ||||||| ||||||||||||| |
|
|
| T |
16024999 |
attcctattgaatttggacaatttaatgtccttgaaatcctagatctcagtggaaattttttggatggaacaataccatcaatgc |
16025083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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