View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_low_12 (Length: 356)
Name: NF16444_low_12
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 51511515 - 51511184
Alignment:
| Q |
12 |
tcatcatggaactggtgtctccaaaattattgttcaaccttctactaagagaattcatcatgatgctctctatgaagaagttggttgtgaaatttcacaa |
111 |
Q |
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| T |
51511515 |
tcatcatggaactggtgtctccaaaattattgttcaaccttctactaagagaattcatcatgatgctctctatgaagaagttggttgtgaaatttcacaa |
51511416 |
T |
|
| Q |
112 |
gacttgtcgccttgtggtctcatccttggcatcaaacaaccagaggtacaattctttcctcctttcttgatattaattactaggtacatattaagtttat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511415 |
gacttgtcgccttgtggtctcatccttggcatcaaacaaccagatgtacaattctttcctcctttcttgatattaattactaggtacatattaagtttat |
51511316 |
T |
|
| Q |
212 |
ggtaaattaaggtatctgcacgttcaactatagagattaatcgctcaatgtaacggatgtatgtttaagtagttgacctctttcaacgtacgttttttgt |
311 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511315 |
ggtaaattaaggtatctacacgttcaactatagagattaatcgctcaatgtaacagatgtatgtttaagtagttgacctctttcaacgtacgttttttgt |
51511216 |
T |
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| Q |
312 |
tgtacgcactgatcaggatcgaactctaaact |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
51511215 |
tgtacgcactgatcaggatcgaactctaaact |
51511184 |
T |
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