View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16444_low_15 (Length: 333)

Name: NF16444_low_15
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16444_low_15
NF16444_low_15
[»] chr2 (1 HSPs)
chr2 (9-333)||(41249186-41249509)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 333
Target Start/End: Complemental strand, 41249509 - 41249186
Alignment:
Q  9 agcacagacaggagctcggtggaaaattggttggttcatgtatggatattcctatttcttatgatat-tggctgctgagatggagccaccattttgggta 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  41249509 agcacggacaggagctcggtggaaaattggttggttcatgtatggatattcctatatcttatgatatgtggctgctgagatggagccaccattttgggta 41249410  T
Q  108 aaaccaaccattatggtgtttcagtcacgtatggaatcatcatttggtgcaacaatgttttgatcacgaaacggcccaatgcattttgcacacgccctta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41249409 aaaccaaccattatggtgtttcagtcacgtatggaatcatcatttggtgcaacaatgttttgatcacgaaacggcccaatgcattttgcacacgccctta 41249310  T
Q  208 attctgtttgtggaaaatgataagctaatttnnnnnnnnnnnnnnnntggtaattattcggtaaaaatgtcatatcttttttgtgcttaggctcgaggag 307  Q
    |||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41249309 attctgtttgtggaaaatgataagctaatttaaaaagaaaagaaaaatggtaattattcggtaaaaatgtcatatcttttttgtgcttaggctcgaggag 41249210  T
Q  308 ataaacatataagaagtcgaagaagc 333  Q
    ||||||  ||||||||||||||||||    
T  41249209 ataaac--ataagaagtcgaagaagc 41249186  T

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