View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_low_18 (Length: 290)
Name: NF16444_low_18
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 6634793 - 6635052
Alignment:
| Q |
10 |
attattcttgtacttgaaatgtagttttcagacaatttaattggttcctcaaatttaaaaaatttaaattggtccaaaaagttgaagatggtaaatcagt |
109 |
Q |
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| T |
6634793 |
attattcttgtacttgaaatgtagttttcagacaattt----ggttcctcaaatttaaaaaatttaaattggtccaaaaagttgaagatggtaaatcagt |
6634888 |
T |
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| Q |
110 |
ttattccatctaataataaaaaattagctaaccaaagcatctaatctaataatatatgaaagtgataatttcatgaactaaagagagtgacgataaatca |
209 |
Q |
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| T |
6634889 |
ttattccatctaataataaaaaattagctaaccaaagcatctaatctaataatctatgaaagtgataatttcatgaaccaaagagagtgacaataaatca |
6634988 |
T |
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| Q |
210 |
aaggtcaagattgtagaaatataagatagactctagttaattcgaatttc-gaagatcatattt |
272 |
Q |
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| T |
6634989 |
aaggtcaagattgtagaaatataagatagactctagtcaattcgaatttcaaaagatcatattt |
6635052 |
T |
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