View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_low_2 (Length: 635)
Name: NF16444_low_2
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 11 - 616
Target Start/End: Complemental strand, 33220850 - 33220245
Alignment:
| Q |
11 |
cacagacacatatgattagattcgatcaatagctgcaaacaccttaggccttatcatattagtttgattttccaaatatgatgcatttattacaatagca |
110 |
Q |
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| T |
33220850 |
cacagacacatgtgattagattcgatcaatagctgcaaacaccttaggccttatcatattagtttgattttccaaatatgatgcatttattacaatagca |
33220751 |
T |
|
| Q |
111 |
aatatatccaaattatatttatttcactgccagctatatcttaccaatgcaagcctaatcttttctttttcatttgtttcaggataatcatcactgacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33220750 |
aatatatccaaattatatttatttcactgccagctatatcttaccaatgcaagcctaatcttttctttttcatttgtttcaggataatcatcactgacca |
33220651 |
T |
|
| Q |
211 |
atttcatgtttttattatggtaaaacaatttcaagggtataatggtaaagtgagaaattaccaactttagtttcctttctagagacaaaactaagaaatg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33220650 |
atttcatgtttttattatggtaaaacaatttcaagggtataatggtaaagtgagaaattaccaactttagtttcctttctagagacaaaactaagaaatg |
33220551 |
T |
|
| Q |
311 |
gatacactgaaggagtatttatcaagcaaagcagaaaaaatagctacatctctatacaactacacattaagggcaagacgaagttgtaacaacaatggat |
410 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33220550 |
gatacactgaacgagtatttatcaagcaaagcagaaaaaatagctacatctctatacaactacacattaagggcaagacgaagttgtaacaataatggat |
33220451 |
T |
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| Q |
411 |
attattgttataatccttatcatggtctcaaaaccatagttcattcagaagaagaagaaaacctacacaagagagttctacattgctacaaggtgtgcaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33220450 |
attattgttataatccttatcatggtctcaaaaccatagttcattcagaagaagaagaaaacctacacaagagagttctacattgctacaaggtgtgcaa |
33220351 |
T |
|
| Q |
511 |
aactgaaactgcaccttcacaagattcagaaacatgttctttactatggcagagactgtcaaagtcattgtggtcatcatcacctggttcgacagccata |
610 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33220350 |
aactgaaactgcaccttcacaagattcagaaacatgttctttactatggcagagactgtcaaagtcattgtggtcatcatcgcctggttcgacagccata |
33220251 |
T |
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| Q |
611 |
ccatca |
616 |
Q |
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|||||| |
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| T |
33220250 |
ccatca |
33220245 |
T |
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