View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_low_20 (Length: 266)
Name: NF16444_low_20
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 37169422 - 37169165
Alignment:
| Q |
1 |
ccctggaggggtgtgacgaattgaggaagggaaagtttgtcacgtggcaaaggtttctttgaagcatagctcaagctttgacaaattactgggtaggtta |
100 |
Q |
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| T |
37169422 |
ccctggaggggtgtgacgaattgaggaagggaaagtttgtcacgtggcaaaggtttctttgaagcatagctcaagctttgacaaattactgggtaggtta |
37169323 |
T |
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| Q |
101 |
ctctcatgagcctgtgatacagactgtggtgtgtgaagctttttatgttt---------------tttgcaggctgagatagggattgtctataatgact |
185 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37169322 |
ctctcatgagcgtgtgatacagactgtggtgtgtgaagctttttatgttttttgtatttattttttttgcaggctgagatagggattgtctataatgact |
37169223 |
T |
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| Q |
186 |
gaaacgcctctgtaaaaaggtttagtaagtcaactattcaacggtcaatcctgctagt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37169222 |
gaaacgcctctgtaaaaaggtttagtaagtcaactattcaacggtcaatcctgctagt |
37169165 |
T |
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