View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_low_21 (Length: 242)
Name: NF16444_low_21
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 36149404 - 36149632
Alignment:
| Q |
1 |
tttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagt |
100 |
Q |
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| T |
36149404 |
tttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccattgtgtgtggaattacttcgacaccatgcagt |
36149503 |
T |
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| Q |
101 |
ggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtg |
200 |
Q |
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| T |
36149504 |
ggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtg |
36149603 |
T |
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| Q |
201 |
catatgtgtaattgacaagttcttcttct |
229 |
Q |
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| T |
36149604 |
cacatgtgtaattgacaagtgcttcttct |
36149632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 36083446 - 36083533
Alignment:
| Q |
123 |
gagaatcattttccatcatgggaacttcttcttgt---tgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
207 |
Q |
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| T |
36083446 |
gagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgt |
36083533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 36149636 - 36149799
Alignment:
| Q |
47 |
tctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtg------aaggaggcggagaatcattttccatca |
140 |
Q |
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| T |
36149636 |
tctttgtgaatttgagcttccatgatgtgtggaatcacttccacttcttgcagctgtggcggtggtggtggtgaaggaggcggagaatcactttccttca |
36149735 |
T |
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| Q |
141 |
tgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
207 |
Q |
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| T |
36149736 |
tttgcacttctttttctagcttgggagag---tcttcttctttctcatctattttgagtgcacatgt |
36149799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 26527590 - 26527381
Alignment:
| Q |
1 |
tttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||| || ||| ||| |
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| T |
26527590 |
tttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacatgagcttccatggtgtggggaatcacttccacttcatacagc |
26527491 |
T |
|
| Q |
101 |
ggtggcg------gcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattt |
194 |
Q |
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| T |
26527490 |
agtggcggtggtagtggtgaaggaggcggaaaatcactttcattcatgtgcacttctttttctagcttgggagagtg---ttcttctatctcatctattt |
26527394 |
T |
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| Q |
195 |
tgagtgcatatgt |
207 |
Q |
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|||||||| |||| |
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| T |
26527393 |
tgagtgcacatgt |
26527381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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