View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16444_low_24 (Length: 236)

Name: NF16444_low_24
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16444_low_24
NF16444_low_24
[»] chr1 (10 HSPs)
chr1 (1-219)||(15010314-15010532)
chr1 (1-220)||(15016428-15016647)
chr1 (1-219)||(15036334-15036552)
chr1 (1-204)||(15024446-15024649)
chr1 (1-204)||(15031787-15031990)
chr1 (13-219)||(15001421-15001627)
chr1 (1-128)||(15040161-15040288)
chr1 (1-112)||(14523204-14523315)
chr1 (1-132)||(14503383-14503514)
chr1 (52-132)||(14467204-14467284)
[»] scaffold0400 (2 HSPs)
scaffold0400 (16-132)||(5892-6008)
scaffold0400 (15-125)||(12187-12297)
[»] scaffold0365 (2 HSPs)
scaffold0365 (16-132)||(6536-6652)
scaffold0365 (15-125)||(12830-12940)
[»] chr7 (5 HSPs)
chr7 (32-132)||(14605299-14605399)
chr7 (36-132)||(16102283-16102379)
chr7 (36-132)||(16171961-16172057)
chr7 (37-132)||(16024482-16024577)
chr7 (16-105)||(17847959-17848048)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15010532 - 15010314
Alignment:
Q  1 atgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttca 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15010532 atgtagtccaagtttggatacacaccaaaactctctgttatatttccagtaagttggttttgatcaagcctcagtctcgtaaggcttgagcaattcttca 15010433  T
Q  101 aactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcccaccgacacatatattgtgaggtaaatgaccaacaaaatt 200  Q
    |||||||||||||||||||||||||||||||||||| || | ||||       ||||||||||| ||||| ||||||||||||||||||||||||||| |    
T  15010432 aactctctggaactaggcctgtgaactggttaagtgcagcagtgaatgtttttaacttcccaccaacacaaatattgtgaggtaaatgaccaacaaaaat 15010333  T
Q  201 attatcggataaatcgagt 219  Q
    |||||| ||||||| ||||    
T  15010332 attatcagataaatggagt 15010314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15016647 - 15016428
Alignment:
Q  1 atgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttca 100  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15016647 atgtagtccaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgttcaagcctcagtctcttaaggcttgagcaattcttca 15016548  T
Q  101 aactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcccaccgacacatatattgtgaggtaaatgaccaacaaaatt 200  Q
    |||||||||||||||||||||||||||||||||| | || |  |||       ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  15016547 aactctctggaactaggcctgtgaactggttaagagcagcagagaatttttccaacttcccaccgacacaaatattatgaggtaaatgaccaacaaaatt 15016448  T
Q  201 attatcggataaatcgagtg 220  Q
    ||||||  | ||||||||||    
T  15016447 attatcatacaaatcgagtg 15016428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15036552 - 15036334
Alignment:
Q  1 atgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttca 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||| ||||||||||||||||||||    
T  15036552 atgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttggttaagcctcaatctctcaaggcttgagcaattcttca 15036453  T
Q  101 aactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcccaccgacacatatattgtgaggtaaatgaccaacaaaatt 200  Q
    |||||||||||||||||||| ||||||||||||||| || | ||||       ||||||||||||||||| |||||||||||||||||||||| ||| ||    
T  15036452 aactctctggaactaggcctctgaactggttaagtgcagcagtgaatgtttttaacttcccaccgacacaaatattgtgaggtaaatgaccaataaattt 15036353  T
Q  201 attatcggataaatcgagt 219  Q
    ||||||  |||| ||||||    
T  15036352 attatcatataattcgagt 15036334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 15024649 - 15024446
Alignment:
Q  1 atgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttca 100  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  15024649 atgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttca 15024550  T
Q  101 aactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcccaccgacacatatattgtgaggtaaatgaccaacaaaatt 200  Q
    ||||||||||||||| ||| |||||||||||||||  || | ||||       | ||||||||||||||| |||||||||||||||||||||||||||||    
T  15024549 aactctctggaactaagccagtgaactggttaagtccagcagtgaatttttttatcttcccaccgacacaaatattgtgaggtaaatgaccaacaaaatt 15024450  T
Q  201 atta 204  Q
    ||||    
T  15024449 atta 15024446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 15031990 - 15031787
Alignment:
Q  1 atgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttca 100  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  15031990 atgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttca 15031891  T
Q  101 aactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcccaccgacacatatattgtgaggtaaatgaccaacaaaatt 200  Q
    ||||||||||||||| ||| |||||||||||||||  || | ||||       | ||||||||||||||| |||||||||||||||||||||||||||||    
T  15031890 aactctctggaactaagccagtgaactggttaagtccagcagtgaatttttttatcttcccaccgacacaaatattgtgaggtaaatgaccaacaaaatt 15031791  T
Q  201 atta 204  Q
    ||||    
T  15031790 atta 15031787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 15001627 - 15001421
Alignment:
Q  13 tttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaa 112  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||| | ||| |||| |||| |||||||||||||||||||||||||||||||||    
T  15001627 tttggatacacaccaaagctgtctgttatatttccagtcagttggttttgttgaagtctcactctcgtaaggcttgagcaattcttcaaactctctggaa 15001528  T
Q  113 ctaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcccaccgacacatatattgtgaggtaaatgaccaacaaaattattatcggataa 212  Q
    |||||||||||||||||||||||| |  | ||||       ||||||||||||  ||| ||||||||||||||||||||||||||||||||||| |||||    
T  15001527 ctaggcctgtgaactggttaagtgcaacagtgaacatttttaacttcccaccgttacaaatattgtgaggtaaatgaccaacaaaattattatcagataa 15001428  T
Q  213 atcgagt 219  Q
    || ||||    
T  15001427 atggagt 15001421  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 15040288 - 15040161
Alignment:
Q  1 atgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttca 100  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| |  ||||||||||| ||||| |||| |||||| || ||||| ||||||||||    
T  15040288 atgtagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaagtctcactctctttagacttgaacaattcttca 15040189  T
Q  101 aactctctggaactaggcctgtgaactg 128  Q
    |||||| ||||| | | |||||||||||    
T  15040188 aactctttggaattggacctgtgaactg 15040161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 14523204 - 14523315
Alignment:
Q  1 atgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttca 100  Q
    ||||||| ||| |||||||||||||||||||| |||||||||||||| |||| || |||||| | ||| |||| |||  ||||||| || || |||||||    
T  14523204 atgtagtccaaatttggatacacaccaaaactatctgttatatttcctgtcattttgttttggttaagtctcaatcttataaggctagaacagttcttca 14523303  T
Q  101 aactctctggaa 112  Q
    ||||||||||||    
T  14523304 aactctctggaa 14523315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 14503514 - 14503383
Alignment:
Q  1 atgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttca 100  Q
    ||||||| ||| | |||||| ||||||||||  |||||||||||||| || | ||| ||||  | |||||| | |||  ||||||| ||||||||||| |    
T  14503514 atgtagtccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttta 14503415  T
Q  101 aactctctggaactaggcctgtgaactggtta 132  Q
    |||||| ||||| | | |||||||| ||||||    
T  14503414 aactctttggaattggccctgtgaattggtta 14503383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 14467284 - 14467204
Alignment:
Q  52 agttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta 132  Q
    ||||| ||||| | |||||| | ||| | |||||| ||||| ||||||||||||| ||||| | |||||||||| ||||||    
T  14467284 agttgattttgttgaagccttactctataaaggctagagcagttcttcaaactctttggaattgggcctgtgaattggtta 14467204  T

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Target: scaffold0400 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 6008 - 5892
Alignment:
Q  16 ggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaacta 115  Q
    |||||||||||||| || |||||||||||| | |||||||||||||| | ||| |||| ||||||||||||||||||||| || ||||||| ||||||||    
T  6008 ggatacacaccaaagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaacta 5909  T
Q  116 ggcctgtgaactggtta 132  Q
    | ||  |||||||||||    
T  5908 gaccaatgaactggtta 5892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 12297 - 12187
Alignment:
Q  15 tggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaact 114  Q
    |||||| ||||||||||  |||||||||||||| || | ||| ||||  | |||||| | |||  ||||||| ||||||||||||||||||  |||||||    
T  12297 tggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttcaaactcattggaact 12198  T
Q  115 aggcctgtgaa 125  Q
    |  ||||||||    
T  12197 aatcctgtgaa 12187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 6652 - 6536
Alignment:
Q  16 ggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaacta 115  Q
    |||||||||||||| || |||||||||||| | |||||||||||||| | ||| |||| ||||||||||||||||||||| || ||||||| ||||||||    
T  6652 ggatacacaccaaagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaacta 6553  T
Q  116 ggcctgtgaactggtta 132  Q
    | ||  |||||||||||    
T  6552 gaccaatgaactggtta 6536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 12940 - 12830
Alignment:
Q  15 tggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaact 114  Q
    |||||| ||||||||||  |||||||||||||| || | ||| ||||  | |||||| | |||  ||||||| ||||||||||||||||||  |||||||    
T  12940 tggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttcaaactcattggaact 12841  T
Q  115 aggcctgtgaa 125  Q
    |  ||||||||    
T  12840 aatcctgtgaa 12830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 14605399 - 14605299
Alignment:
Q  32 tctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtt 131  Q
    |||||||||||||||| || ||||||||||| ||||| || |  ||  ||| ||| ||||||||||||||||||| |||||||  ||||||||| |||||    
T  14605399 tctctgttatatttccagtaagttggttttgttcaagtctaatcctaataatgctagagcaattcttcaaactctttggaactgagcctgtgaagtggtt 14605300  T
Q  132 a 132  Q
    |    
T  14605299 a 14605299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 16102379 - 16102283
Alignment:
Q  36 tgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta 132  Q
    |||||||||||| || ||||||||||| ||||| || |||||  ||| ||| |||||||||||||||||||  |||||| |||| ||||| ||||||    
T  16102379 tgttatatttccagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaactcggccggtgaagtggtta 16102283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 16172057 - 16171961
Alignment:
Q  36 tgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta 132  Q
    |||||||||||| || ||||||||||| ||||| || |||||  ||| ||| |||||||||||||||||||  |||||| |||| ||||| ||||||    
T  16172057 tgttatatttccagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaactcggccggtgaagtggtta 16171961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 16024577 - 16024482
Alignment:
Q  37 gttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta 132  Q
    ||||||||||| || ||||||||||| ||||| |  |||||  ||| ||| ||||||||||||||||||| ||||||  |||| ||||| ||||||    
T  16024577 gttatatttccagtaagttggttttgttcaagtcgaagtcttataatgctagagcaattcttcaaactctttggaacgcggccagtgaagtggtta 16024482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 17848048 - 17847959
Alignment:
Q  16 ggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactc 105  Q
    ||||||||||||||    |||||||||||||| |  ||||||||||| |||||||| | |||   || ||||||||||||||||||||||    
T  17848048 ggatacacaccaaagaaatctgttatatttccagaaagttggttttgttcaagcctaattcttacaatgcttgagcaattcttcaaactc 17847959  T

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