View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_low_27 (Length: 204)
Name: NF16444_low_27
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 36622537 - 36622622
Alignment:
| Q |
102 |
acctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcctaccagcaaaatgatagtattt |
187 |
Q |
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| T |
36622537 |
acctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcctaccagcaaaatgatagtattt |
36622622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 36633341 - 36633426
Alignment:
| Q |
102 |
acctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcctaccagcaaaatgatagtattt |
187 |
Q |
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| T |
36633341 |
acctttgtgacaaaaaataacacaccttgatcattgcattcaatggtaattttatctttaatcctaccagcaaaatgatagaattt |
36633426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 36627776 - 36627860
Alignment:
| Q |
104 |
ctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcctaccagcaaaatgatagtatttg |
188 |
Q |
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| T |
36627776 |
ctttgtgactaaaaacaacaccccttggtcattacattcaatggtaattctatctttaatcctaccagcaaaaggatagtatttg |
36627860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36626842 - 36626878
Alignment:
| Q |
1 |
cttccatgttcacaattgcttcaatcccatctccatc |
37 |
Q |
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| T |
36626842 |
cttccatgttcacaatcgcttcaatcccatctccatc |
36626878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 36626886 - 36626914
Alignment:
| Q |
32 |
tccatcaaaaatataatattccttgaaga |
60 |
Q |
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| T |
36626886 |
tccatcaaaaatataatattccttgaaga |
36626914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 34320274 - 34320191
Alignment:
| Q |
104 |
ctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcctaccagcaaaatgatagtattt |
187 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||| | |||||||| |
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| T |
34320274 |
ctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtattt |
34320191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 34329164 - 34329098
Alignment:
| Q |
122 |
cacaccttgatcattacattcaatggtaattttatctttaatcctaccagcaaaatgatagtatttg |
188 |
Q |
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| T |
34329164 |
cacaccttgatcattacattcgacggtaattttatctttcaaccttccagcaaaaggataatatttg |
34329098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34321226 - 34321190
Alignment:
| Q |
1 |
cttccatgttcacaattgcttcaatcccatctccatc |
37 |
Q |
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| T |
34321226 |
cttccatgttcacaatagcttcaatcccttctccatc |
34321190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 45306918 - 45306984
Alignment:
| Q |
122 |
cacaccttgatcattacattcaatggtaattttatctttaatcctaccagc-aaaatgatagtatttg |
188 |
Q |
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||||||||| || |||||||||||||||||||||||||| | ||||||||| |||||| ||||||||| |
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| T |
45306918 |
cacaccttggtcgttacattcaatggtaattttatctttcaacctaccagcgaaaatg-tagtatttg |
45306984 |
T |
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