View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16444_low_3 (Length: 611)
Name: NF16444_low_3
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 28813341 - 28813936
Alignment:
| Q |
1 |
cggagtacattatggtgattttgagctccaacctcaatttgttctgcatatctcttgactttctttttcataaacttatagttaatgtagtatctgtaaa |
100 |
Q |
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| T |
28813341 |
cggagtacattatggtgattttgagctccaacctcaatttgttctacatatctcttgactttctttttcataaacttatagttaatgtagtatctgtaaa |
28813440 |
T |
|
| Q |
101 |
aaattaaaacgtgttacctaaattaaacaaaacatttctgagtttggtacaagaatcaaaagaaaaaagcatgaatattgttaccctttccattcttgaa |
200 |
Q |
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| T |
28813441 |
aaattaaaacgtgttacctaaattaaacaaaacatttctgactttggtacaagaatcaaaagaaaaaagcatgaatattgttaccctttccattcttgaa |
28813540 |
T |
|
| Q |
201 |
tctgtgattctctcaacttcttgccaaaagcaaccatattgtgcactgnnnnnnnnnnnnnnnccttaagaccaatacaatattttcaagctactcaaga |
300 |
Q |
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| T |
28813541 |
tctgtgattctctcaacttcttgccaaaagcaaccatattgtgcactaaaaaaatacaaaaaaccttaagaccaatacaatattttcaagctactcaaga |
28813640 |
T |
|
| Q |
301 |
tgctacaaaagaatgtttaaatagaagcagaaattaaaccttgtaattattagcagtatccctctt----ctttgaaatcaaatcaaaacttcaattgca |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
28813641 |
tgctacaaaagaatgtttaaatagaagcagaaattaaaccttgtaattattagcagtatccctctttcttctttgaaatcaaatcaaa-cttcaattgca |
28813739 |
T |
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| Q |
397 |
acaatatcattgacttttgtatctgaaaccaaattagtatagctcaatatgaatacttcctattaagtagaaaacatttagcattgaaatgtgacaaata |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28813740 |
acaatatcattgacttttgtatctgaaaccaaattagtatagctcaatatgaatacttcctattaagtagaaaacatttagcattgaaatgtgacaaata |
28813839 |
T |
|
| Q |
497 |
taaaaagcacaatcagttataaattataaattctgattttgtttaacgttaatttcgctttttaataattgttttgtcatttaatcaactccatgat |
593 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28813840 |
taaaaagcacaatcagttataaattataaattctgattttgtttaacgttaatttcgctttttaataattgttttgtcatttaatcaactccatgat |
28813936 |
T |
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