View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16444_low_4 (Length: 592)
Name: NF16444_low_4
Description: NF16444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16444_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Original strand, 35619136 - 35619695
Alignment:
| Q |
17 |
aaaaagatggttagagttagttcagtgggcttataaacaaactgttagagtcggttagatatagcaacagacttatccattatccattttctgtatcagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35619136 |
aaaaagatggttagagttagttcagtgggcttataaacaaactgttagagtcggttagatatagcaacagacttatccattatccattttctgtatcagt |
35619235 |
T |
|
| Q |
117 |
atattatacacttccttgctgaacattttgtttttcatgcaatgagaatggatcttgcttctgttcttcttttcccctctcttacattccttcgtatttt |
216 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35619236 |
atat---atacttccttgctgaacattttgtttttcatgcaatgagaatggatcttgcttctgttcttcttttcccctctcttacattccttcgtatttt |
35619332 |
T |
|
| Q |
217 |
agattcctcatatggtgtcaaactgtcaattcctcagcttcgtcattgtcatgcctcgaaatgctcctcccgtcgttactccgttaccggctccgacgga |
316 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35619333 |
agattcctcatatggtgtc--------aattcctcatcttcgtcattgtcatgcctcgaaatgctcctcccgtcgttactccgttaccggctccgacgga |
35619424 |
T |
|
| Q |
317 |
tctctcacaaaatccgttctatattcatccttctgaaaatcctttaaatggattggggcaagaattacaatcactcaacaatgtgattacctatatcact |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35619425 |
tctctcacaaaatccgttctatattcatccttctgaaaatcctttaaatggattggggcaagaattacaatcactcaacaatgtgattacctatatcact |
35619524 |
T |
|
| Q |
417 |
caacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcaggacgaggtatat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35619525 |
caacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcaggacgaggtatat |
35619624 |
T |
|
| Q |
517 |
atcttctttcctagagcctcatctttgcagattcaaggatacaagacgttccattccaggcctatgcttct |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35619625 |
atcttctttcctagagcctcatctttgcagattcaaggatacaagacgttccattccaggccaatgcttct |
35619695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 505
Target Start/End: Complemental strand, 6568038 - 6567983
Alignment:
| Q |
450 |
caaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcagg |
505 |
Q |
| |
|
|||||||| || ||||| | |||||||||||| |||||||||||||||||| |||| |
|
|
| T |
6568038 |
caaactcactacaatgctggtatgagagttctcaaatatctcaaaggatgtccagg |
6567983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 478
Target Start/End: Complemental strand, 44666893 - 44666826
Alignment:
| Q |
411 |
atcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagt |
478 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||| |||||||||||| ||||||||||| ||||||| |
|
|
| T |
44666893 |
atcacacaacaattaagccaatttctttctaaaccaacacaaactcatcataatgcagctctgagagt |
44666826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 19813128 - 19813052
Alignment:
| Q |
402 |
attacctatatcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagt |
478 |
Q |
| |
|
||||||| ||| || |||||||| ||||| ||||| |||||||||||| | ||| |||||||| ||||||||||| |
|
|
| T |
19813128 |
attacctttattacacaacaattgagccagtttctctccaaacctacacacattcactataatgctgctatgagagt |
19813052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 479
Target Start/End: Original strand, 14040708 - 14040776
Alignment:
| Q |
411 |
atcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagtt |
479 |
Q |
| |
|
|||||||||||| | || ||| ||||||| ||||||||||| || ||||| ||||| ||| |||||||| |
|
|
| T |
14040708 |
atcactcaacaacttagtcaatttctcagtaaacctacacatacccattacaatgctgctctgagagtt |
14040776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University