View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16445_high_5 (Length: 254)
Name: NF16445_high_5
Description: NF16445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16445_high_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 105233 - 105010
Alignment:
| Q |
15 |
aacatattcataaattcaacacaatttcagattagagaatataaggggttagggtttttcaaatcaaaataacaacaaatatgaggcaaaattagaggct |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
105233 |
aacatattcataaatttaacacaatttcagattagagaatataaggggttagggtttttcaaatcaaaataacaacaaacatgaggcaaaattagaggct |
105134 |
T |
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| Q |
115 |
acattcggaatttggaagggaagaaaattagggtttagaatnnnnnnnnttggccttttgatttatattacaagttgttggaacacatgattttgagtaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105133 |
acattcggaatttggaagggaagaaaattagggtttagaataaaaaaaattggccttttgatttatattacaagttgttggaacacatgattttgagtaa |
105034 |
T |
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| Q |
215 |
ggagaggaacgatgatggtgagaa |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
105033 |
ggagaggaacgatgatggtgagaa |
105010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 31546132 - 31545994
Alignment:
| Q |
22 |
tcataaattcaacacaatttcagattagagaatataaggggttagggttttt-----caaatcaaaataacaacaaatatgaggcaaaattagaggctac |
116 |
Q |
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|||||| || |||||||||||| |||| ||| |||||||| ||||| |||| ||||| |||| | || ||||| ||||||||||| | |||||| |
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| T |
31546132 |
tcataagttgaacacaatttcatattaaagagtataagggattaggtttttcttttccaaattaaaacaccatcaaatctgaggcaaaataaaaggctat |
31546033 |
T |
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| Q |
117 |
attcggaatttggaagggaagaaaattagggtttagaat |
155 |
Q |
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| T |
31546032 |
atttcaaatttgaaagggaagaaaattagggtttagaat |
31545994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 44163411 - 44163516
Alignment:
| Q |
36 |
caatttcagattagagaatataagggg-ttagggtttttcaaatcaaaataacaacaaatatgaggcaaaattagaggctacattcggaatttggaaggg |
134 |
Q |
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||||||||||||||||| || |||||| ||||||||| ||||||||||| | || ||||| ||| |||||| | |||| | ||| ||||||||||||| |
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| T |
44163411 |
caatttcagattagagagtagaagggggttagggtttctcaaatcaaaacaccatcaaatctgaaacaaaataaaaggcaatatttcgaatttggaaggg |
44163510 |
T |
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| Q |
135 |
aagaaa |
140 |
Q |
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|||||| |
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| T |
44163511 |
aagaaa |
44163516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 38727570 - 38727655
Alignment:
| Q |
70 |
ttttcaaatcaaaataacaacaaatatgaggcaaaattagaggctacattcggaatttggaagggaagaaaattagggtttagaat |
155 |
Q |
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|||| ||||||||| |||| ||||| ||||||||| | ||| || ||| ||||||| ||||||||||| |||||||||||||| |
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| T |
38727570 |
ttttaaaatcaaaacaacatcaaattcaaggcaaaataaaaggttatatttcgaatttgaaagggaagaaacttagggtttagaat |
38727655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 41425110 - 41425006
Alignment:
| Q |
36 |
caatttcagattagagaatataaggggttagggtttttcaaatcaaaataacaacaaatatgaggcaaaattagaggctacattcggaatttggaaggga |
135 |
Q |
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||||||| ||||||||| || ||||||||||| ||| ||||||||||| | || ||||| ||| |||||| | | || | ||| |||||||||||||| |
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| T |
41425110 |
caatttcggattagagagtagaaggggttaggatttctcaaatcaaaacaccatcaaatctgaaacaaaataaaaagcaatatttcgaatttggaaggga |
41425011 |
T |
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| Q |
136 |
agaaa |
140 |
Q |
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||||| |
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| T |
41425010 |
agaaa |
41425006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 1068423 - 1068527
Alignment:
| Q |
36 |
caatttcagattagagaatataaggggttagggtttttcaaatcaaaataacaacaaatatgaggcaaaattagaggctacattcggaatttggaaggga |
135 |
Q |
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||||||| ||||||||| || ||||||||||| ||| ||||||||||| | || ||||| ||| |||||| | | || | ||| |||||||||||||| |
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| T |
1068423 |
caatttcggattagagagtagaaggggttaggatttctcaaatcaaaacaccatcaaatctgaaacaaaataaaaagcaatattttgaatttggaaggga |
1068522 |
T |
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| Q |
136 |
agaaa |
140 |
Q |
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||||| |
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| T |
1068523 |
agaaa |
1068527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 23275831 - 23275911
Alignment:
| Q |
70 |
ttttcaaatcaaaataacaacaaatatgaggcaaaattagaggctacattcggaatttggaagggaagaaaattagggttt |
150 |
Q |
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|||||||||||||| |||| ||||| ||||||||| | ||| || ||| |||||| |||||||||||| ||||||||| |
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| T |
23275831 |
ttttcaaatcaaaacaacatcaaattcaaggcaaaataaaaggttatatttcgaatttagaagggaagaaacttagggttt |
23275911 |
T |
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