View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16445_low_1 (Length: 816)

Name: NF16445_low_1
Description: NF16445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16445_low_1
NF16445_low_1
[»] chr8 (4 HSPs)
chr8 (208-802)||(10496246-10496829)
chr8 (135-237)||(26738481-26738584)
chr8 (135-237)||(41291446-41291548)
chr8 (205-257)||(34187014-34187067)
[»] chr4 (5 HSPs)
chr4 (135-254)||(11123463-11123581)
chr4 (181-255)||(2322582-2322656)
chr4 (184-238)||(18915584-18915637)
chr4 (163-237)||(52820598-52820671)
chr4 (172-237)||(50890705-50890770)
[»] chr3 (1 HSPs)
chr3 (161-253)||(42154890-42154983)
[»] chr2 (1 HSPs)
chr2 (180-250)||(12204677-12204747)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 208 - 802
Target Start/End: Original strand, 10496246 - 10496829
Alignment:
Q  208 tacataaaaattatcatttgttttcattttaaatcattaacaagtgtcctaaggcgtatacttgctagcaatatccaataaattatttacaaatg--aca 305  Q
    ||||||||||||| || | |||||||||||| ||||||||||| |||| |||||   | |||||||| ||| ||||||||||||||||||||||   |||    
T  10496246 tacataaaaattaacaatagttttcattttacatcattaacaaatgtc-taagg---acacttgctaccaagatccaataaattatttacaaattttaca 10496341  T
Q  306 accgtgattcaagaaaaatttcggtt---tatttattttagacatttcttaatctttggttcattgtgttgaccagtcactttccctaaagaaaagtagg 402  Q
    || |||||| ||||||||| || |||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10496342 acggtgatttaagaaaaatctcagttaattattttttttagacatttcttaatctttggttcattgtgttgaccagtcactttccctaaagagaagtagg 10496441  T
Q  403 ttgaagtgttaaacaaaccaatgaaccatcactgtgattctcactcactagtgaagaaatttgtaacgtgtttgttaattagtcaacattgatactctta 502  Q
    || ||||||||||||| |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10496442 ttaaagtgttaaacaatcca--------tcactgtgattctcactcactagtgaagaaatttgtaacgtgtttgttaattagtcaacattgatactatta 10496533  T
Q  503 agtcttaatccaacgaattagctctcaacatatagaaatataagaccctagctacgtacatctttaaataatatgtcattctctttgatcttcttttagc 602  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10496534 agtcgtaatccaacgaattagctctcaacatatagaaatataagacccta----cgtacatctttaaataatatgtcattctctttgatcttcttttagc 10496629  T
Q  603 aatttcttcattgaatcatgaatttatagctcataatcttttaaccttttatatgcaatgtaggtggctaatctgccatctgtctgtaaggtttgttaat 702  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10496630 aatttcttcattgaatcatgaatttatagcttataatcttttaaccttttatatgcaatgtaggtggctaatctgccatctgtctgtaaggtttgttaat 10496729  T
Q  703 tagtcaacattaacgtaattgattcaagaccttttaaaaaattcaatacttgaatttaccttcaaagtttatataatgtgattccccattggtagtaaat 802  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10496730 tagtcaacattaacgtaattgattcaataccatttcaaaaattcaatacttgaatttatcttcaaagtttatataatgtgattccccattggtagtaaat 10496829  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 26738584 - 26738481
Alignment:
Q  135 aagtttaaagtaaaatttttagcatgagatttgtatgttcaacctattgaaacattaaaaatcaattttcttttacataaaaattat-catttgttttca 233  Q
    |||||||||||| || ||||| | ||| || ||| | |||||| ||||||||||||||||||||| ||| ||||| || |||||||| || |||||||||    
T  26738584 aagtttaaagtagaaattttatcctgaaatatgtgtattcaacatattgaaacattaaaaatcaacttttttttatatgaaaattatccacttgttttca 26738485  T
Q  234 tttt 237  Q
    ||||    
T  26738484 tttt 26738481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 41291548 - 41291446
Alignment:
Q  135 aagtttaaagtaaaatttttagcatgagatttgtatgttcaacctattgaaacattaaaaatcaattttcttttacataaaaattatcatttgttttcat 234  Q
    |||||||||||| || |||||    ||||||||||| |||||| ||||||||||| |||||  |||||| |||||||| ||||||| || || |||| ||    
T  41291548 aagtttaaagtataaattttatatggagatttgtatattcaacatattgaaacatcaaaaaataatttttttttacattaaaattaccaattatttttat 41291449  T
Q  235 ttt 237  Q
    |||    
T  41291448 ttt 41291446  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 34187014 - 34187067
Alignment:
Q  205 ttttacataaaaattatcatttgttttcatttt-aaatcattaacaagtgtcct 257  Q
    |||||||| |||||||||| |||||| |||||| ||||| ||||||||||||||    
T  34187014 ttttacatgaaaattatcaattgtttccatttttaaatctttaacaagtgtcct 34187067  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 11123463 - 11123581
Alignment:
Q  135 aagtttaaagtaaaatttttagcatgagatttgtatgttcaacctattgaaacattaaaaatcaattttcttttacataaaaattatcatttgttttcat 234  Q
    ||||||||||| ||| ||||| |||   |||||| | |||||| |||| |||||| |||||||||| || || |||||| ||||||| | |||||| |||    
T  11123463 aagtttaaagtgaaaattttatcatagaatttgtgtattcaacatattaaaacatcaaaaatcaatctt-ttctacatagaaattattaattgtttccat 11123561  T
Q  235 tttaaatcattaacaagtgt 254  Q
    |||||||| |||| ||||||    
T  11123562 tttaaatctttaataagtgt 11123581  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 2322656 - 2322582
Alignment:
Q  181 ttgaaacattaaaaatcaattttcttttacataaaaattatcatttgttttca-ttttaaatcattaacaagtgtc 255  Q
    ||||||||| ||||||||||||| || ||||| | ||||||||  |||||||| ||||||||| ||||||||||||    
T  2322656 ttgaaacatcaaaaatcaatttt-ttctacatgataattatcaaatgttttcatttttaaatctttaacaagtgtc 2322582  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 18915584 - 18915637
Alignment:
Q  184 aaacattaaaaatcaattttcttttacataaaaattatcatttgttttcatttta 238  Q
    |||||| ||||| ||||||| ||||||||||||||||||| |||||| |||||||    
T  18915584 aaacatcaaaaaacaatttt-ttttacataaaaattatcaattgtttccatttta 18915637  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 52820671 - 52820598
Alignment:
Q  163 atttgtatgttcaacctattgaaacattaaaaatcaattttcttttacataaaaattatcatttgttttcatttt 237  Q
    |||||| |||||||| ||||||| ||| ||||| ||||||| || ||||||||| |||| | |||||||||||||    
T  52820671 atttgtgtgttcaacatattgaagcatcaaaaaacaatttt-ttatacataaaagttattaattgttttcatttt 52820598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 50890770 - 50890705
Alignment:
Q  172 ttcaacctattgaaacattaaaaatcaattttcttttacataaaaattatcatttgttttcatttt 237  Q
    |||||||||||||||  ||||||| ||| ||| |||||||||||| ||| || |||||| ||||||    
T  50890770 ttcaacctattgaaattttaaaaagcaacttttttttacataaaatttagcaattgtttccatttt 50890705  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 42154983 - 42154890
Alignment:
Q  161 agatttgtatgttcaacctattgaaacattaaaaatcaattttcttttacataaaaattatcatttgttttca-ttttaaatcattaacaagtg 253  Q
    |||||||||| ||| || ||||||||||| ||||| ||||||| || | |||||||||||||| || ||| || ||||||||| ||| ||||||    
T  42154983 agatttgtatattcgacatattgaaacataaaaaaacaatttttttgtgcataaaaattatcaattatttacatttttaaatctttagcaagtg 42154890  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 12204677 - 12204747
Alignment:
Q  180 attgaaacattaaaaatcaattttcttttacataaaaattatcatttgttttcattt-taaatcattaacaa 250  Q
    |||||||||||||||| ||  ||| ||||||| ||||||||||| |||||| ||||| ||||||||||||||    
T  12204677 attgaaacattaaaaaacatattt-ttttacagaaaaattatcaattgtttccatttctaaatcattaacaa 12204747  T

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