View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16445_low_2 (Length: 672)
Name: NF16445_low_2
Description: NF16445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16445_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 233 - 656
Target Start/End: Original strand, 3524616 - 3525040
Alignment:
| Q |
233 |
tcaaccctccaaaggaaaggagcattcctccaagaattttccaccaccgaatataaggccttatttgagagccaatgattatgattattaaagtaaaaca |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3524616 |
tcaaccctccaaaggaaaggagcattcctccaagaattttccaccaccgaatgtaaggccttatttgagagccaatgattatgattattaaagtaaaaca |
3524715 |
T |
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| Q |
333 |
ttgttggtcctcaatcatgattatcaaatttgtgacaagagggcaaaaacatccttattcaaaaccaataaactcaaatcccccactctgttaaccattg |
432 |
Q |
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| T |
3524716 |
ttgttggtcctcaatcatgattatcaaatttgtgacaagagggcaaaaacatccttattcaaaaccaattaactcaaatcccccactctgttaaccattg |
3524815 |
T |
|
| Q |
433 |
aatgaagaccaaaattctatttagctgattcaaacatttaccatttggtatgccgacttgatagatctgaaaaactttatgtggattgtaacctagtatg |
532 |
Q |
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| T |
3524816 |
aatgaagaccaaaattctatttagctgattcaaacatttaccatttggtataccgactttatagatctgaaagactttatgtgagtcgtaacctgatatg |
3524915 |
T |
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| Q |
533 |
tttagctaaataaacttttaaataatccctaacattttatattttaaaaaat-atgtgtggttgggatctaacgttagcatacttgcataaggagcccta |
631 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||| |
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| T |
3524916 |
tttagctaaataaacttttaaataagctctaacattttatattttaaaaaatcatgtgtggttgggatctaacgttagcataattgcataagaaacccta |
3525015 |
T |
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| Q |
632 |
gatgtatttaactttgagtcttact |
656 |
Q |
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| T |
3525016 |
gttgtatttaactttgattcttact |
3525040 |
T |
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Back To:
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Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 3524422 - 3524618
Alignment:
| Q |
8 |
ggtagataatactatgtttactcttcaaaagcaaccaaagatccgannnnnnnncaaacctaagacctcctctttagtaagaccctcttattcatat--t |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3524422 |
ggtacataatactatgtttactcttcaaaagcaaccaaagatccgattttttttcaaacctaagacctcctctttagtaagaccctcttattcatatatt |
3524521 |
T |
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| Q |
106 |
tgaagtctagagttgctatatacgtcaagcccattgattttctcctccaaatccccatacacttttcagttccacttcttgatttcaccctttatca |
202 |
Q |
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| T |
3524522 |
tgaagtctagagttgctatatacgtcaagcccattgattttctcctccaaatccccatacacttttcagttccacttcttgatttcaccctttatca |
3524618 |
T |
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