View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16445_low_5 (Length: 391)

Name: NF16445_low_5
Description: NF16445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16445_low_5
NF16445_low_5
[»] chr6 (8 HSPs)
chr6 (110-338)||(27588641-27588849)
chr6 (338-380)||(27588874-27588916)
chr6 (45-142)||(25079365-25079459)
chr6 (338-380)||(26807192-26807234)
chr6 (338-380)||(26639861-26639903)
chr6 (338-380)||(26745827-26745869)
chr6 (44-143)||(28783446-28783541)
chr6 (346-380)||(25079113-25079147)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 110 - 338
Target Start/End: Original strand, 27588641 - 27588849
Alignment:
Q  110 atcagtgtaatgcttgaaagtacaaaactaaaactttttgagtaatttagcctcataaaacaaaattttgattttaac-cttccatttgctagatcaaaa 208  Q
    |||| |||||||||||||||||||||||||||||||    ||| ||  ||  ||||||||||||||||| |||||||  | |||||||||||||||||||    
T  27588641 atcaatgtaatgcttgaaagtacaaaactaaaactt----agttataaagt-tcataaaacaaaatttttattttaattcatccatttgctagatcaaaa 27588735  T
Q  209 acaaaatttaatgttgttttcttatactattacgttcatacacataaatgtttccaccacagatgccatgttttttcaatttttaacttgatataaacaa 308  Q
    ||||||||||||||||||||||||||||||               |||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |    
T  27588736 acaaaatttaatgttgttttcttatactat---------------aaat-tttccaccacagatgccatgtttttgcaattttgaacttgatataaacga 27588819  T
Q  309 tgatataagatgaagtttaacttgacctgt 338  Q
    ||||||||||||||||||||||||||||||    
T  27588820 tgatataagatgaagtttaacttgacctgt 27588849  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 27588874 - 27588916
Alignment:
Q  338 taacagtattcatactccctaagaaatgacaagttatgcatat 380  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27588874 taacagtattcatactccctaagaaatgacaagttatgcatat 27588916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 25079459 - 25079365
Alignment:
Q  45 atttcatttttcttctttatgtacaatgaagattttaatcattctcatcatgcactcattacaacatcagtgtaatgcttgaaagtacaaaactaaaa 142  Q
    |||||| |||| ||||| |||||||||| ||||||| |    |||| |||||||||||||||||||||| ||||||||||| |||  |||||||||||    
T  25079459 atttcaatttttttcttgatgtacaatgcagatttttaa---tctcctcatgcactcattacaacatcaatgtaatgcttggaaggtcaaaactaaaa 25079365  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 26807234 - 26807192
Alignment:
Q  338 taacagtattcatactccctaagaaatgacaagttatgcatat 380  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  26807234 taacagtatttatactccctaagaaatgacaagttatgcatat 26807192  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 26639903 - 26639861
Alignment:
Q  338 taacagtattcatactccctaagaaatgacaagttatgcatat 380  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  26639903 taactgtattcatattccctaagaaatgacaagttatgcatat 26639861  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 26745869 - 26745827
Alignment:
Q  338 taacagtattcatactccctaagaaatgacaagttatgcatat 380  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  26745869 taactgtattcatattccctaagaaatgacaagttatgcatat 26745827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 28783541 - 28783446
Alignment:
Q  44 aatttcatttttcttctttatgtacaatgaagattttaatcattctcatcatgcactcattacaacatcagtgtaatgcttgaaagtacaaaactaaaac 143  Q
    |||||||||||||||||| || |||| ||||||||||||||    ||  |||||| ||||||||||| || ||||||||| | ||| |||||||| ||||    
T  28783541 aatttcatttttcttcttgatttacagtgaagattttaatc----tccgcatgcattcattacaacaccaatgtaatgctcggaagcacaaaactgaaac 28783446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 25079147 - 25079113
Alignment:
Q  346 ttcatactccctaagaaatgacaagttatgcatat 380  Q
    |||| ||||||||||||||||||||||||||||||    
T  25079147 ttcacactccctaagaaatgacaagttatgcatat 25079113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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