View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16445_low_7 (Length: 255)

Name: NF16445_low_7
Description: NF16445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16445_low_7
NF16445_low_7
[»] chr3 (3 HSPs)
chr3 (10-247)||(11897148-11897405)
chr3 (88-247)||(26432588-26432747)
chr3 (9-86)||(26432769-26432846)
[»] chr8 (2 HSPs)
chr8 (10-247)||(23132475-23132732)
chr8 (94-242)||(14760026-14760174)
[»] chr2 (2 HSPs)
chr2 (10-247)||(14653570-14653827)
chr2 (86-143)||(573285-573342)
[»] chr1 (2 HSPs)
chr1 (10-247)||(20284849-20285106)
chr1 (86-143)||(50451991-50452048)
[»] scaffold0036 (1 HSPs)
scaffold0036 (92-143)||(76006-76057)
[»] chr4 (2 HSPs)
chr4 (94-140)||(54477407-54477453)
chr4 (86-143)||(3881811-3881868)
[»] chr5 (1 HSPs)
chr5 (94-128)||(20585630-20585664)
[»] chr6 (1 HSPs)
chr6 (88-152)||(13599681-13599745)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 11897148 - 11897405
Alignment:
Q  10 acatcatcatcaagctcatcatgcattgcgtaggttctccgagttactctatactttggaatgggaacaagttgccgcct-------------------- 89  Q
    |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||                        
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  90 ccgacaaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 189  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  190 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 26432747 - 26432588
Alignment:
Q  88 ctccgacaaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcac 187  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || |||||||| ||||| || |||  |||||||||||||| ||    
T  26432747 ctccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaac 26432648  T
Q  188 ccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 247  Q
    | || |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432647 cgattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 26432846 - 26432769
Alignment:
Q  9 gacatcatcatcaagctcatcatgcattgcgtaggttctccgagttactctatactttggaatgggaacaagttgccg 86  Q
    ||||||| |||||| |||||||||||||| ||   |||  | |  |||||||||||||||||||||||||||||||||    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccg 26432769  T

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Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 23132732 - 23132475
Alignment:
Q  10 acatcatcatcaagctcatcatgcattgcgtaggttctccgagttactctatactttggaatgggaacaagttgccgcct-------------------- 89  Q
    |||||| ||||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||                        
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  90 ccgacaaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 189  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  190 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 247  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 14760026 - 14760174
Alignment:
Q  94 caaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacccatcc 193  Q
    ||||| |||||||||||||| || |||||||| ||||| ||||||||||| ||   |||||| || ||||| |||   |||||||| |||| |||  | |    
T  14760026 caaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgggaaccggttc 14760125  T
Q  194 aaatcacccctacggggccgcatttatcccatctcctatttgcagatga 242  Q
    |||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760126 aaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

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Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 14653827 - 14653570
Alignment:
Q  10 acatcatcatcaagctcatcatgcattgcgtaggttctccgagttactctatactttggaatgggaacaagttgccgcct-------------------- 89  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                        
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  90 ccgacaaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 189  Q
    || ||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||||| ||||||||||| | |||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  190 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 247  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 573285 - 573342
Alignment:
Q  86 gcctccgacaaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagct 143  Q
    ||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573285 gcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

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Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 20284849 - 20285106
Alignment:
Q  10 acatcatcatcaagctcatcatgcattgcgtaggttctccgagttactctatactttggaatgggaacaagttgccgcctc------------------- 90  Q
    |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||   ||||||||||                        
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  91 -cgacaaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 189  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  190 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 50451991 - 50452048
Alignment:
Q  86 gcctccgacaaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagct 143  Q
    |||||||||||||||||||| | || ||||| |||||||| ||||| ||||| |||||    
T  50451991 gcctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

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Target: scaffold0036 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 76006 - 76057
Alignment:
Q  92 gacaaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagct 143  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  76006 gacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 54477453 - 54477407
Alignment:
Q  94 caaggtgatccgttgtccccttatctcttcatcctttgcatggaaaa 140  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  54477453 caaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 3881811 - 3881868
Alignment:
Q  86 gcctccgacaaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagct 143  Q
    |||||||||||||||||||| | || | ||| |||||||| ||||| |||||||||||    
T  3881811 gcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 20585630 - 20585664
Alignment:
Q  94 caaggtgatccgttgtccccttatctcttcatcct 128  Q
    ||||||||||||||||| |||||||||||||||||    
T  20585630 caaggtgatccgttgtcaccttatctcttcatcct 20585664  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 13599681 - 13599745
Alignment:
Q  88 ctccgacaaggtgatccgttgtccccttatctcttcatcctttgcatggaaaagctttcagctgc 152  Q
    ||||| |||||||||||  | || ||||||||||||||| | || |||||||| |||||||||||    
T  13599681 ctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactttcagctgc 13599745  T

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