View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16445_low_9 (Length: 224)

Name: NF16445_low_9
Description: NF16445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16445_low_9
NF16445_low_9
[»] chr5 (4 HSPs)
chr5 (10-216)||(40516664-40516870)
chr5 (57-105)||(42910475-42910523)
chr5 (40-99)||(5173786-5173845)
chr5 (59-100)||(8825465-8825506)
[»] chr7 (3 HSPs)
chr7 (55-123)||(39887629-39887697)
chr7 (59-104)||(36729584-36729629)
chr7 (59-105)||(47430762-47430808)
[»] chr1 (3 HSPs)
chr1 (32-99)||(43049436-43049503)
chr1 (59-118)||(38577926-38577986)
chr1 (57-99)||(13697233-13697275)
[»] scaffold0020 (1 HSPs)
scaffold0020 (68-105)||(172529-172566)
[»] chr3 (1 HSPs)
chr3 (59-123)||(4030229-4030293)
[»] chr8 (2 HSPs)
chr8 (59-106)||(3631174-3631221)
chr8 (72-105)||(28431397-28431430)
[»] chr4 (3 HSPs)
chr4 (59-117)||(30746107-30746165)
chr4 (58-105)||(32028235-32028282)
chr4 (67-100)||(36114915-36114948)
[»] chr2 (3 HSPs)
chr2 (59-99)||(16244926-16244966)
chr2 (58-106)||(36322714-36322762)
chr2 (63-106)||(9436122-9436165)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 40516870 - 40516664
Alignment:
Q  10 tatatatttggtatcaatgtgcgtgtgtttgaatcacggcaacctactgtgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgggcca 109  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40516870 tatatatttggtatcactgtgcgtgtgtttgaatcacgacaacctactatgattttatagaagctacaaagtgtagcttttgaaaaatcatggtgggcca 40516771  T
Q  110 ccttgattccgacacacatattgcacaatagttttgatgagtgacttgcttgttgcacaataattttgatgagtgaaagtcctgagctcaagagacatat 209  Q
    ||||||||| ||||||||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40516770 ccttgattctgacacacatgttgaacaataattttgatgagtgaattgcttgttgcacaataattttgatgagtgaaagtcctcagctcaagagacatat 40516671  T
Q  210 gatgatg 216  Q
    |||||||    
T  40516670 gatgatg 40516664  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 42910475 - 42910523
Alignment:
Q  57 tgtgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgg 105  Q
    |||||||||  ||||||||||||||| |||||||||||||||| |||||    
T  42910475 tgtgattttgtagaagctacaaagtgcagcttttgaaaaatcacggtgg 42910523  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 5173786 - 5173845
Alignment:
Q  40 gaatcacggcaacctactgtgattttacagaagctacaaagtgtagcttttgaaaaatca 99  Q
    |||||||||  | |||| |||||||||||||||||||||| ||||| |||| ||||||||    
T  5173786 gaatcacggtgatctaccgtgattttacagaagctacaaaatgtagatttttaaaaatca 5173845  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 8825506 - 8825465
Alignment:
Q  59 tgattttacagaagctacaaagtgtagcttttgaaaaatcat 100  Q
    |||||||||||||| |||||| |||||||||| |||||||||    
T  8825506 tgattttacagaagttacaaaatgtagcttttaaaaaatcat 8825465  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 39887697 - 39887629
Alignment:
Q  55 actgtgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgggccaccttgattccgaca 123  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||| |||||| | || |||||| ||||    
T  39887697 actgtgattttgcagaagctacaaagtgtagcttttggaaaatcacggtgggtcgccatgattctgaca 39887629  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 36729629 - 36729584
Alignment:
Q  59 tgattttacagaagctacaaagtgtagcttttgaaaaatcatggtg 104  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||    
T  36729629 tgattttacaaaacctacaaagtgtagcttttgcaaaatcatggtg 36729584  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 47430762 - 47430808
Alignment:
Q  59 tgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgg 105  Q
    ||||||| |||||||||| ||||||||||||| ||||||||| ||||    
T  47430762 tgattttgcagaagctaccaagtgtagctttttaaaaatcattgtgg 47430808  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 43049503 - 43049436
Alignment:
Q  32 gtgtgtttgaatcacggcaacctactgtgattttacagaagctacaaagtgtagcttttgaaaaatca 99  Q
    ||||| |||||||||||| ||| ||  ||||||| |||||||||||||||||||||||| ||||||||    
T  43049503 gtgtgcttgaatcacggcgacccaccatgattttgcagaagctacaaagtgtagcttttaaaaaatca 43049436  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 38577926 - 38577986
Alignment:
Q  59 tgattttacagaa-gctacaaagtgtagcttttgaaaaatcatggtgggccaccttgattc 118  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||||| ||| | ||||||    
T  38577926 tgattttacagaaagctacaaagtgtagcttttggaaaatcaaggtggaccaacgtgattc 38577986  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 13697275 - 13697233
Alignment:
Q  57 tgtgattttacagaagctacaaagtgtagcttttgaaaaatca 99  Q
    ||||||||| | ||||||||| |||||||||||||||||||||    
T  13697275 tgtgattttgctgaagctacacagtgtagcttttgaaaaatca 13697233  T

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Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 172566 - 172529
Alignment:
Q  68 agaagctacaaagtgtagcttttgaaaaatcatggtgg 105  Q
    ||||||||||||||||||||||||||||||||||||||    
T  172566 agaagctacaaagtgtagcttttgaaaaatcatggtgg 172529  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 4030229 - 4030293
Alignment:
Q  59 tgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgggccaccttgattccgaca 123  Q
    ||||||| ||||||||||||||||||||||||||||||| |  |||| ||||| |||||| ||||    
T  4030229 tgattttgcagaagctacaaagtgtagcttttgaaaaattacagtggaccaccgtgattctgaca 4030293  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 3631221 - 3631174
Alignment:
Q  59 tgattttacagaagctacaaagtgtagcttttgaaaaatcatggtggg 106  Q
    |||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  3631221 tgattttacagaagttacaaagtgtatcttttgaaaaatcatgatggg 3631174  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 28431430 - 28431397
Alignment:
Q  72 gctacaaagtgtagcttttgaaaaatcatggtgg 105  Q
    |||| |||||||||||||||||||||||||||||    
T  28431430 gctataaagtgtagcttttgaaaaatcatggtgg 28431397  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 30746107 - 30746165
Alignment:
Q  59 tgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgggccaccttgatt 117  Q
    ||||||| ||||| ||||||||||| | |||||||||||||||||||| || |||||||    
T  30746107 tgattttgcagaacctacaaagtgttgtttttgaaaaatcatggtgggtcatcttgatt 30746165  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 32028282 - 32028235
Alignment:
Q  58 gtgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgg 105  Q
    |||||||| || |||||| |||||||||||||||||||||||| ||||    
T  32028282 gtgattttgcataagctataaagtgtagcttttgaaaaatcatagtgg 32028235  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 36114948 - 36114915
Alignment:
Q  67 cagaagctacaaagtgtagcttttgaaaaatcat 100  Q
    ||||||||| ||||||||||||||||||||||||    
T  36114948 cagaagctataaagtgtagcttttgaaaaatcat 36114915  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 16244926 - 16244966
Alignment:
Q  59 tgattttacagaagctacaaagtgtagcttttgaaaaatca 99  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  16244926 tgattttacagaagctacagagtgtagcttttggaaaatca 16244966  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 36322762 - 36322714
Alignment:
Q  58 gtgattttacagaagctacaaagtgtagcttttgaaaaatcatggtggg 106  Q
    ||||||||  |||||||||||||||||| ||||||||||||| ||||||    
T  36322762 gtgattttgtagaagctacaaagtgtagtttttgaaaaatcacggtggg 36322714  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 9436122 - 9436165
Alignment:
Q  63 tttacagaagctacaaagtgtagcttttgaaaaatcatggtggg 106  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||    
T  9436122 tttacagaaactacaaagtgtagtttttgaaaaatcatagtggg 9436165  T

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