View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16446_low_2 (Length: 638)
Name: NF16446_low_2
Description: NF16446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16446_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 13 - 638
Target Start/End: Original strand, 41364972 - 41365580
Alignment:
| Q |
13 |
cagagaaacaaactgagatttaccactaaaactctagagatttaggtgtgatgggcaacaattataagcaaaccagcttttcaaagtatgcatcacatca |
112 |
Q |
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| T |
41364972 |
cagagaaacaaactgagatttaccactaaaactctagagatttaggtgtgatgggcaacaattataagcaaaccagcttttcaaagtatgcatcacatca |
41365071 |
T |
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| Q |
113 |
atattcaaagctattacagaaaaagactataaattctgaaattatgtgagcaacttgtaagaatattcagtttttatattttaatgattaaacatggggt |
212 |
Q |
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| T |
41365072 |
atattcaaagctattacagaaaaagactataaattctgaaattatgtgagcaacttgtaagaatattcagttt-----------------aacatggggt |
41365154 |
T |
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| Q |
213 |
ctcttgcatcgagtatcataaagaatttctatgggcacctgtatgaaacaacatatgttatgtgtgtcaaagagtgacgtgttattaattaaagtgtaaa |
312 |
Q |
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| T |
41365155 |
ctcttgcatcgagtatcataaagaatttctattggcacctgtatgaaacaacatatgttatgtgtgtcaaagagtgacgtgttattaattaaagtgtaaa |
41365254 |
T |
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| Q |
313 |
tgttgcccaattacaagataaggacatgatctctagcaaggcctgattctgatgtgatttcatggaaacaagatatacaggaataacaatgctaatgtca |
412 |
Q |
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| T |
41365255 |
tgttgcccaattacaagattaggacatgatctctagcaaggcctgattctgatgtgatttcatggaaacaagatatacaggaataacaatactaatgtca |
41365354 |
T |
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| Q |
413 |
gcactagttttctatcaagaaatcctggatccttaattatagttcaagtggaacttatgtagaaacagattttgcaattaagtcagcctatcaatgcata |
512 |
Q |
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| T |
41365355 |
gcacttgttttctatcaagaaatcctggatccttaattatagttcaagtggaacttatgtagaaacagattttgcaattaagtcagcctatcaatgcata |
41365454 |
T |
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| Q |
513 |
gaactgatgtagcactgacatatatagttacaacgcctaatcaaataatcaagtacacttttaaagagcagaaagtaaacatgagnnnnnnnacaggcaa |
612 |
Q |
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| T |
41365455 |
gaactgatgtagcactgacatatatagttacaacgcctaatcaaataatcaagtacacttttaaagagcagaaagtaaacatgagtttttttacaggcaa |
41365554 |
T |
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| Q |
613 |
atcatagggtcagtgttgtcgatggc |
638 |
Q |
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| T |
41365555 |
atcatagggtcagtgttgtcgatggc |
41365580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 529 - 638
Target Start/End: Complemental strand, 1836738 - 1836629
Alignment:
| Q |
529 |
gacatatatagttacaacgcctaatcaaataatcaagtacacttttaaagagcagaaagtaaacatgagnnnnnnnacaggcaaatcatagggtcagtgt |
628 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| | |
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| T |
1836738 |
gacatatatagttataacgccttatcaaataatcaagtacacttttaaagagcagaaagtaaacatgagtttttttataggcaaatcatagggttagtat |
1836639 |
T |
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| Q |
629 |
tgtcgatggc |
638 |
Q |
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| T |
1836638 |
tgtcgatggc |
1836629 |
T |
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Back To:
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