View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16446_low_3 (Length: 359)

Name: NF16446_low_3
Description: NF16446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16446_low_3
NF16446_low_3
[»] chr3 (36 HSPs)
chr3 (13-280)||(8539446-8539713)
chr3 (13-121)||(27919827-27919935)
chr3 (13-123)||(28036919-28037029)
chr3 (13-150)||(28083088-28083219)
chr3 (15-124)||(17744964-17745073)
chr3 (15-124)||(19046284-19046393)
chr3 (13-101)||(28149242-28149330)
chr3 (13-150)||(28135460-28135591)
chr3 (25-124)||(11420556-11420655)
chr3 (25-114)||(28003687-28003776)
chr3 (56-105)||(28151345-28151394)
chr3 (13-150)||(28185278-28185409)
chr3 (224-334)||(27920073-27920179)
chr3 (37-124)||(18079122-18079209)
chr3 (16-119)||(26127945-26128048)
chr3 (16-119)||(26177995-26178098)
chr3 (13-83)||(27979957-27980027)
chr3 (13-81)||(28161436-28161504)
chr3 (66-124)||(27249808-27249866)
chr3 (35-96)||(26629162-26629223)
chr3 (39-124)||(27459351-27459436)
chr3 (35-96)||(28055905-28055966)
chr3 (35-96)||(28066330-28066391)
chr3 (13-85)||(28005318-28005390)
chr3 (13-121)||(28084533-28084641)
chr3 (41-96)||(26110974-26111029)
chr3 (13-96)||(26233320-26233403)
chr3 (37-96)||(28506896-28506955)
chr3 (213-279)||(11420770-11420836)
chr3 (35-124)||(27348433-27348522)
chr3 (35-124)||(27377773-27377862)
chr3 (213-278)||(28037214-28037279)
chr3 (35-83)||(18025070-18025118)
chr3 (13-101)||(26139909-26139997)
chr3 (37-85)||(26630847-26630895)
chr3 (13-85)||(27379413-27379485)
[»] scaffold0257 (1 HSPs)
scaffold0257 (13-86)||(18663-18736)
[»] scaffold1163 (1 HSPs)
scaffold1163 (13-119)||(1-107)
[»] scaffold0043 (2 HSPs)
scaffold0043 (13-119)||(51909-52015)
scaffold0043 (35-96)||(53648-53709)
[»] scaffold1142 (1 HSPs)
scaffold1142 (13-85)||(1540-1612)
[»] chr4 (2 HSPs)
chr4 (39-87)||(9328780-9328828)
chr4 (39-87)||(9382557-9382605)
[»] chr2 (1 HSPs)
chr2 (13-85)||(22394391-22394463)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 8539713 - 8539446
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8539713 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatca 8539614  T
Q  113 cctcattcaaaagtgagtttattttatttaacaaagccctcaagtattgttgtcatgttttttattattaaatttccatgaaatttcatttataagagtc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8539613 cctcattcaaaagtgagtttattttatttaacaaagccctcaagtattgttgtcatgttttttattattaaatttccatgaaatttcatttataagagtc 8539514  T
Q  213 attttgatataaagagaacataactggagtctacttcttttgacatttgaattcttttgctttctata 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8539513 attttgatataaagagaacataactggagtctacttcttttgacatttgaattcttttgcttcctata 8539446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 27919827 - 27919935
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatca 112  Q
    ||||||||||| | |||||  ||||||||||||||||||| |  ||||| |||||||||||||||  ||||||||||||||||| |||||||||||| ||    
T  27919827 atactacaatcttcaacatccatttaattttaagcagggtatcaaaatatgtgttgaagaaggaatcacatcagctaatgccaagacaaaaacttcagca 27919926  T
Q  113 cctcattca 121  Q
    |||||||||    
T  27919927 cctcattca 27919935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 28036919 - 28037029
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatca 112  Q
    ||||||||||| |||||||  ||||||||||||||||||| | ||||||||||||  ||||||||| |||||||||| || |||||||| ||| ||||||    
T  28036919 atactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgttttagaaggaacaacatcagctactgacaatacaataacatcatca 28037018  T
Q  113 cctcattcaaa 123  Q
     |||| |||||    
T  28037019 gctcactcaaa 28037029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 28083088 - 28083219
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatca 112  Q
    ||||||||||| |||||||   | |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||| | || |||  |||||    
T  28083088 atactacaatcttaaacatctttctaattttaagcaggttagtgaaataagtgttgaagaaggaactacatcagctaatgccaagagaacaacagcatca 28083187  T
Q  113 cctcattcaaaagtgagtttattttatttaacaaagcc 150  Q
          ||| ||||||||||||||||||||||| ||||    
T  28083188 ------tcacaagtgagtttattttatttaacatagcc 28083219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 17745073 - 17744964
Alignment:
Q  15 actacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacc 114  Q
    ||||||||| |||||||   ||||||| ||||||||||   ||||||||||||||||||||||| ||||||||||||||||| | || ||||||| || |    
T  17745073 actacaatcttaaacatctgtttaattataagcagggtaacgaaataagtgttgaagaaggaaccacatcagctaatgccaagagaataacttcagcagc 17744974  T
Q  115 tcattcaaaa 124  Q
    ||||||||||    
T  17744973 tcattcaaaa 17744964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 19046393 - 19046284
Alignment:
Q  15 actacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacc 114  Q
    ||||||||| |||||||   ||||||| ||||||||||   ||||||||||||||||||||||| ||||||||||||||||| | || ||||||| || |    
T  19046393 actacaatcttaaacatctgtttaattataagcagggtaacgaaataagtgttgaagaaggaaccacatcagctaatgccaagagaataacttcagcagc 19046294  T
Q  115 tcattcaaaa 124  Q
    ||||||||||    
T  19046293 tcattcaaaa 19046284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 28149242 - 28149330
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaa 101  Q
    ||||||||||| |||||||  ||||||||||||||||||| | |||||||||| |||||||||||| || |||||||||||||| ||||    
T  28149242 atactacaatcttaaacatccatttaattttaagcagggtatcgaaataagtgctgaagaaggaaccacgtcagctaatgccaagacaa 28149330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 28135460 - 28135591
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatca 112  Q
    ||||||||||| |||| ||   || ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||| | || |||  |||||    
T  28135460 atactacaatcttaaaaatcttttaaattttaagcaggttagtgaaataagtgttgaagaaggaactacatcagctaatgccaagagaacaacagcatca 28135559  T
Q  113 cctcattcaaaagtgagtttattttatttaacaaagcc 150  Q
          ||| ||||||||||||||||||||||| ||||    
T  28135560 ------tcacaagtgagtttattttatttaacatagcc 28135591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 11420556 - 11420655
Alignment:
Q  25 taaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacctcattcaaaa 124  Q
    |||||||  ||||||||||||||||||| || |||||||||| |||||||||||  |||| ||||||||||| |||| ||| ||| ||||||||| ||||    
T  11420556 taaacatgcatttaattttaagcagggtattaaaataagtgtcgaagaaggaacctcatcggctaatgccaaaacaataacatcaccacctcatttaaaa 11420655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 28003687 - 28003776
Alignment:
Q  25 taaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacc 114  Q
    |||||||  ||||||||||||||||||| |||||| |||||||||||| ||||  ||||||||||||||||| |||| ||  ||||||||    
T  28003687 taaacatccatttaattttaagcagggtattgaaaaaagtgttgaagatggaatcacatcagctaatgccaagacaataaaatcatcacc 28003776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 28151345 - 28151394
Alignment:
Q  56 gaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaac 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28151345 gaaataagtgttgaagaaggaactacatcagctaatgccaagacaaaaac 28151394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 28185278 - 28185409
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatca 112  Q
    ||||||||||| |||||||   |||||||||||||||| |   |||||||||||| ||||||||||||| ||| |||||||||| | || |||  |||||    
T  28185278 atactacaatcttaaacatctttttaattttaagcaggttagcgaaataagtgttcaagaaggaactacttcatctaatgccaagagaagaacgacatca 28185377  T
Q  113 cctcattcaaaagtgagtttattttatttaacaaagcc 150  Q
          ||| | ||||||||||||||||||||||||||    
T  28185378 ------tcacaggtgagtttattttatttaacaaagcc 28185409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 27920073 - 27920179
Alignment:
Q  224 aagagaacataactggagtctacttcttttgacatttgaattcttttgctttctatactcctattttctttttctatgatgaagtaagcttacttcagga 323  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||| ||| |||     | |||| | ||||||| |||||||||||||| || |||     
T  27920073 aagagaacataattggagtctactacttttgacatttggattcttttgttttatat----tttttttttctttctataatgaagtaagcttattttaggc 27920168  T
Q  324 aaaaatatata 334  Q
    |||||||||||    
T  27920169 aaaaatatata 27920179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 18079209 - 18079122
Alignment:
Q  37 taattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacctcattcaaaa 124  Q
    |||||||||||||| |   ||||||||||||||| |||||||| |||| ||||||||||| |||| ||| ||||||  ||||||||||    
T  18079209 taattttaagcaggttaacgaaataagtgttgaaaaaggaacttcatcggctaatgccaagacaataacatcatcaaatcattcaaaa 18079122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 26128048 - 26127945
Alignment:
Q  16 ctacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacct 115  Q
    |||||||| ||||||| | ||||  |||||||||||| |  |||||| |||||||||||||||| |||||| ||||||||| |||| ||| || ||| ||    
T  26128048 ctacaatcttaaacatcattttacatttaagcagggtatccaaataaatgttgaagaaggaactgcatcagataatgccaagacaataacatcgtcaact 26127949  T
Q  116 catt 119  Q
    ||||    
T  26127948 catt 26127945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 26178098 - 26177995
Alignment:
Q  16 ctacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacct 115  Q
    |||||||| ||||||| | ||||  |||||||||||| |  |||||| |||||||||||||||| |||||| ||||||||| |||| ||| || ||| ||    
T  26178098 ctacaatcttaaacatcattttacatttaagcagggtatccaaataaatgttgaagaaggaactgcatcagataatgccaagacaataacatcgtcaact 26177999  T
Q  116 catt 119  Q
    ||||    
T  26177998 catt 26177995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 27979957 - 27980027
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacat 83  Q
    |||||||||||  ||||||   |||||||||||||||||| | || |||||||||||||||||||||||||    
T  27979957 atactacaatctcaaacatccttttaattttaagcagggtatcgagataagtgttgaagaaggaactacat 27980027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 28161436 - 28161504
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactac 81  Q
    ||||||||||| |||||||   |||||||||||||||| |   ||||||||||||||||||||||||||    
T  28161436 atactacaatcttaaacatctttttaattttaagcaggttagcgaaataagtgttgaagaaggaactac 28161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 27249808 - 27249866
Alignment:
Q  66 ttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacctcattcaaaa 124  Q
    ||||||||||||| ||||||||||||||||| |||| |   ||||||||||||||||||    
T  27249808 ttgaagaaggaaccacatcagctaatgccaagacaatactatcatcacctcattcaaaa 27249866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 26629162 - 26629223
Alignment:
Q  35 tttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaa 96  Q
    ||||| |||||||||||| | || ||||| |||||||||||||  |||||||||||||||||    
T  26629162 tttaaatttaagcagggtatcgagataagcgttgaagaaggaaacacatcagctaatgccaa 26629223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 27459436 - 27459351
Alignment:
Q  39 attttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacctcattcaaaa 124  Q
    |||||||||||||  | ||| || | |||||||||||||| ||||||||||||||||| | || |||  |||||| ||||||||||    
T  27459436 attttaagcagggcatcgaattacgagttgaagaaggaaccacatcagctaatgccaagataataacaccatcacttcattcaaaa 27459351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 28055905 - 28055966
Alignment:
Q  35 tttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaa 96  Q
    |||||||||||||||| |   |||||||||||| |||||||||||||| || ||||||||||    
T  28055905 tttaattttaagcaggttagcgaaataagtgttcaagaaggaactacaacatctaatgccaa 28055966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 28066330 - 28066391
Alignment:
Q  35 tttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaa 96  Q
    |||||||||||||||| |   |||||||||||| |||||||||||||| || ||||||||||    
T  28066330 tttaattttaagcaggttagcgaaataagtgttcaagaaggaactacaacatctaatgccaa 28066391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 28005318 - 28005390
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatca 85  Q
    |||||||||||  ||||||   | |||||||||||||||| | || | |||||||||||||||||||||||||    
T  28005318 atactacaatctcaaacatccttctaattttaagcagggtatcgagaaaagtgttgaagaaggaactacatca 28005390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 28084533 - 28084641
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatca 112  Q
    ||||||||||| ||| |||   |||||| || |||||||| |  | |||||| |||||||||||||||||||| || ||| ||| |||| ||| ||||||    
T  28084533 atactacaatcttaagcatccttttaatatttagcagggtatgaagataagttttgaagaaggaactacatcaacttatgacaaaacaataacatcatca 28084632  T
Q  113 cctcattca 121  Q
     ||||||||    
T  28084633 actcattca 28084641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 26111029 - 26110974
Alignment:
Q  41 tttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaa 96  Q
    |||||||||||| | || ||||  ||||||||||||| ||||||||||||||||||    
T  26111029 tttaagcagggtatcgagataaacgttgaagaaggaaatacatcagctaatgccaa 26110974  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 26233403 - 26233320
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaa 96  Q
    |||||||||||  || ||| | ||||  |||||||||||| | || ||||  ||||||||||||| ||||||||||||||||||    
T  26233403 atactacaatctaaagcatcattttacatttaagcagggtatcgagataaacgttgaagaaggaaatacatcagctaatgccaa 26233320  T

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Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 28506955 - 28506896
Alignment:
Q  37 taattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaa 96  Q
    |||||||||||||| |  |||||||||||| ||| ||||  |||||||||||||||||||    
T  28506955 taattttaagcaggttagtgaaataagtgtcgaaaaaggtgctacatcagctaatgccaa 28506896  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 11420770 - 11420836
Alignment:
Q  213 attttgatataaagagaacataactggagtctacttcttttgacatttgaattcttttgctttctat 279  Q
    |||||||||||||  | ||| || |||||| | || |||||||||||||||||||||| ||||||||    
T  11420770 attttgatataaattggacaaaattggagtttgctgcttttgacatttgaattctttttctttctat 11420836  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 27348433 - 27348522
Alignment:
Q  35 tttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacctcattcaaaa 124  Q
    |||||||||||||||||||| || |||| ||||||||||| |||| ||| | ||||| |||| |||  ||  || ||| |||||||||||    
T  27348433 tttaattttaagcagggtgtcgagataactgttgaagaagtaactgcattaactaataccaagacattaaaatcctcaactcattcaaaa 27348522  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 27377773 - 27377862
Alignment:
Q  35 tttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatcacctcattcaaaa 124  Q
    |||||||||||||||||| |||| |||| ||||||||||| |||| ||| | ||||| |||| |||  ||  || ||| |||||||||||    
T  27377773 tttaattttaagcagggtattgagataactgttgaagaagtaactgcattaactaataccaagacattaaaatcctcaactcattcaaaa 27377862  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 28037214 - 28037279
Alignment:
Q  213 attttgatataaagagaacataactggagtctacttcttttgacatttgaattcttttgctttcta 278  Q
    ||||||||||||||| |||| || |||| ||| |  ||||||||||||| ||||||||| ||||||    
T  28037214 attttgatataaagataacaaaattggattctgcgacttttgacatttggattcttttgttttcta 28037279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 18025118 - 18025070
Alignment:
Q  35 tttaattttaagcagggtgttgaaataagtgttgaagaaggaactacat 83  Q
    |||||||||||||||||| | || |||| || |||||||||||||||||    
T  18025118 tttaattttaagcagggtatcgagataactgctgaagaaggaactacat 18025070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 26139997 - 26139909
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaa 101  Q
    ||||||||||| |||||||   ||||  | |||||||||| |  | |||| |||||||||||||| |||||||| ||||||||| ||||    
T  26139997 atactacaatcttaaacatcgttttacatataagcagggtatccagataaatgttgaagaaggaaatacatcagttaatgccaagacaa 26139909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 26630847 - 26630895
Alignment:
Q  37 taattttaagcagggtgttgaaataagtgttgaagaaggaactacatca 85  Q
    |||||||||||||| | | || ||||||||||||||||||| |||||||    
T  26630847 taattttaagcaggttatcgagataagtgttgaagaaggaagtacatca 26630895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 27379413 - 27379485
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatca 85  Q
    ||||||||||| |||||||   |||||| || ||||||||  ||| ||||||  |||||||||||||||||||    
T  27379413 atactacaatcttaaacatccttttaatatttagcagggtaatgagataagttctgaagaaggaactacatca 27379485  T

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Target: scaffold0257 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 18663 - 18736
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcag 86  Q
    ||||||||||| |||||||   || ||||||||||||| |  |||||||||||||||| |||||||||||||||    
T  18663 atactacaatcttaaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 18736  T

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Target: scaffold1163 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 1 - 107
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatca 112  Q
    ||||||||||| |||||||   |||||| || ||||||||   || |||||| |||||||||||||||||||| ||  || ||| |||| ||| ||||||    
T  1 atactacaatcttaaacatccttttaatatttagcagggtagcgagataagttttgaagaaggaactacatcaacttgtgacaaaacaataacatcatca 100  T
Q  113 cctcatt 119  Q
     ||||||    
T  101 actcatt 107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 52015 - 51909
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaacttcatca 112  Q
    ||||||||||| |||||||   |||||| || ||||||||   || |||||| |||||||||||||||||||| ||  || ||| |||| ||| ||||||    
T  52015 atactacaatcttaaacatccttttaatatttagcagggtagcgagataagttttgaagaaggaactacatcaacttgtgacaaaacaataacatcatca 51916  T
Q  113 cctcatt 119  Q
     ||||||    
T  51915 actcatt 51909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 53709 - 53648
Alignment:
Q  35 tttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatcagctaatgccaa 96  Q
    |||||||||||||||||||| || |||| ||||||||||| |||| ||| | ||||| ||||    
T  53709 tttaattttaagcagggtgtcgagataactgttgaagaagtaactgcattaactaattccaa 53648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 1540 - 1612
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatca 85  Q
    ||||||||||| ||||||||  |||| | || ||||||||   || || ||||||||||||||||||||||||    
T  1540 atactacaatcttaaacattcttttattgtttagcagggtaacgagatgagtgttgaagaaggaactacatca 1612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 9328828 - 9328780
Alignment:
Q  39 attttaagcagggtgttgaaataagtgttgaagaaggaactacatcagc 87  Q
    |||||||||||| |   |||||||||||||||||||||||| |||||||    
T  9328828 attttaagcaggttagcgaaataagtgttgaagaaggaactgcatcagc 9328780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 9382605 - 9382557
Alignment:
Q  39 attttaagcagggtgttgaaataagtgttgaagaaggaactacatcagc 87  Q
    |||||||||||| |   |||||||||||||||||||||||| |||||||    
T  9382605 attttaagcaggttagcgaaataagtgttgaagaaggaactgcatcagc 9382557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 22394391 - 22394463
Alignment:
Q  13 atactacaatcctaaacattaatttaattttaagcagggtgttgaaataagtgttgaagaaggaactacatca 85  Q
    ||||||||||| |||||||   |||||| || ||||||||  ||| |||||| ||||||||||||| ||||||    
T  22394391 atactacaatcttaaacatgcttttaatgtttagcagggtaatgagataagttttgaagaaggaacaacatca 22394463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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