View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16446_low_5 (Length: 271)

Name: NF16446_low_5
Description: NF16446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16446_low_5
NF16446_low_5
[»] chr3 (4 HSPs)
chr3 (20-261)||(41365557-41365797)
chr3 (37-261)||(1836428-1836652)
chr3 (78-219)||(47601920-47602058)
chr3 (91-123)||(31503758-31503790)
[»] chr2 (3 HSPs)
chr2 (73-155)||(34765145-34765225)
chr2 (73-121)||(16419947-16419995)
chr2 (73-121)||(16246636-16246684)
[»] chr5 (2 HSPs)
chr5 (73-126)||(22816841-22816894)
chr5 (73-128)||(36612233-36612288)
[»] chr8 (1 HSPs)
chr8 (73-123)||(2102954-2103004)
[»] chr4 (2 HSPs)
chr4 (73-125)||(33710887-33710940)
chr4 (74-126)||(47192724-47192776)
[»] chr1 (1 HSPs)
chr1 (73-126)||(45903917-45903970)
[»] chr7 (1 HSPs)
chr7 (73-121)||(42496885-42496933)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 41365797 - 41365557
Alignment:
Q  20 caaagccctcctctctaaactcttcaaaatccaattcccaagcataccctatacagtgttgtcaaatctcagccatggcggatatcggtggcggtttttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41365797 caaagccctcctctctaaactcttcaaaatccaattcccaagcataccctatacagtgttgtcaaatctcagccatggcggatatcggtggcg-tttttt 41365699  T
Q  120 ggctttctgtcatgtggccaattttgtgatggatggtgatgccacagcgtcatacatcggacatggtagcgctatatgtcatccggtatggcgggttttt 219  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  41365698 ggctttctgccatgtggccaattttgggatggatggtgatgccacggcatcatacatcggacatggtggcgctatatgtcagccggtatggcgggttttt 41365599  T
Q  220 aactctctgccatggtcggccatcgacaacactgaccctatg 261  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41365598 aactctctgccatggtcggccatcgacaacactgaccctatg 41365557  T

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Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 37 - 261
Target Start/End: Original strand, 1836428 - 1836652
Alignment:
Q  37 aactcttcaaaatccaattcccaagcataccctatacagtgttgtcaaatctcagccatggcggatatcggtggcggttttttggctttctgtcatgtgg 136  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  1836428 aactcttcaaaatccaattcctaagcataccctaaacaatgttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttctgccatgtgg 1836527  T
Q  137 ccaattttgtgatggatggtgatgccacagcgtcatacatcggacatggtagcgctatatgtcatccggtatggcgggtttttaactctctgccatggtc 236  Q
    |||||||||||| |||||||||  |||   | |||| |||||||||| || ||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  1836528 ccaattttgtgaaggatggtgactccatgacatcatccatcggacatagtggcgctatatgtcagccggtatggcgggtttttagctctctgccatggtc 1836627  T
Q  237 ggccatcgacaacactgaccctatg 261  Q
    |||||||||||| ||| ||||||||    
T  1836628 ggccatcgacaatactaaccctatg 1836652  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 47602058 - 47601920
Alignment:
Q  78 ttgtcaaatctcagccatggcggatatcggtggcggttttttggctttctgtcatgtggccaattttgtgatggatggtgatgccacagcgtcatacatc 177  Q
    ||||||||| |  |||||||  |||||| ||||||| |||||||||||||| ||  |||||| |||||||| ||| || |||||||| ||| ||||| ||    
T  47602058 ttgtcaaatattggccatggaagatatcagtggcgggtttttggctttctgaca--tggccagttttgtgaaggacggcgatgccacggcgccatac-tc 47601962  T
Q  178 ggacatggtagcgctatatgtcatccggtatggcgggttttt 219  Q
    ||| ||||  || | | |||||  | ||||||||||||||||    
T  47601961 ggatatggaggcaccacatgtcggctggtatggcgggttttt 47601920  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 31503758 - 31503790
Alignment:
Q  91 gccatggcggatatcggtggcggttttttggct 123  Q
    |||||||||||||||||||||||||||| ||||    
T  31503758 gccatggcggatatcggtggcggtttttgggct 31503790  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 34765145 - 34765225
Alignment:
Q  73 cagtgttgtcaaatctcagccatggcggatatcggtggcggttttttggctttctgtcatgtggccaattttgtgatggatgg 155  Q
    |||||||||||||| ||||||||||| |||||| ||||||| |||||||||||  | ||  ||||||||||||||| ||||||    
T  34765145 cagtgttgtcaaatatcagccatggcagatatcagtggcgggtttttggcttttcgcca--tggccaattttgtgaaggatgg 34765225  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 16419995 - 16419947
Alignment:
Q  73 cagtgttgtcaaatctcagccatggcggatatcggtggcggttttttgg 121  Q
    |||||||||||||| |||| |||||||||||||||||| || |||||||    
T  16419995 cagtgttgtcaaatatcagtcatggcggatatcggtggtggatttttgg 16419947  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 16246636 - 16246684
Alignment:
Q  73 cagtgttgtcaaatctcagccatggcggatatcggtggcggttttttgg 121  Q
    |||||||||||||| | ||||||| |||||||||| ||||| |||||||    
T  16246636 cagtgttgtcaaatattagccatgacggatatcggcggcggatttttgg 16246684  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 22816894 - 22816841
Alignment:
Q  73 cagtgttgtcaaatctcagccatggcggatatcggtggcggttttttggctttc 126  Q
    |||||||||||||| || ||||||||||||| | ||||||||||||||||||||    
T  22816894 cagtgttgtcaaatatcggccatggcggatagcagtggcggttttttggctttc 22816841  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 36612233 - 36612288
Alignment:
Q  73 cagtgttgtcaaatctcagccatggcggatatcggtggcggttttttggctttctg 128  Q
    |||||||||||||| || |||||||| |||||| |||||||||||| |||| ||||    
T  36612233 cagtgttgtcaaatatccgccatggcagatatctgtggcggtttttgggctctctg 36612288  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 2103004 - 2102954
Alignment:
Q  73 cagtgttgtcaaatctcagccatggcggatatcggtggcggttttttggct 123  Q
    |||||||||||||| || |||||||||||||| |||||| |||||| ||||    
T  2103004 cagtgttgtcaaatatcggccatggcggatattggtggcagtttttgggct 2102954  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 33710887 - 33710940
Alignment:
Q  73 cagtgttgtcaaatctcagccatggc-ggatatcggtggcggttttttggcttt 125  Q
    |||||||||||||| || |||||||| |||||| ||||| ||||||||||||||    
T  33710887 cagtgttgtcaaatatcggccatggcaggatattggtgggggttttttggcttt 33710940  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 47192776 - 47192724
Alignment:
Q  74 agtgttgtcaaatctcagccatggcggatatcggtggcggttttttggctttc 126  Q
    ||||||||||||| |  |||||||| |||||||||||| | ||||||||||||    
T  47192776 agtgttgtcaaatattggccatggcagatatcggtggcaggtttttggctttc 47192724  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 45903970 - 45903917
Alignment:
Q  73 cagtgttgtcaaatctcagccatggcggatatcggtggcggttttttggctttc 126  Q
    |||||||||||||| || |||||| | |||||| ||||||| ||||||||||||    
T  45903970 cagtgttgtcaaatatcggccatgacagatatcagtggcgggtttttggctttc 45903917  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 42496933 - 42496885
Alignment:
Q  73 cagtgttgtcaaatctcagccatggcggatatcggtggcggttttttgg 121  Q
    |||||||||||||| | || |||||||||| |||||||||| |||||||    
T  42496933 cagtgttgtcaaatattagtcatggcggatgtcggtggcggatttttgg 42496885  T

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