View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16446_low_6 (Length: 242)
Name: NF16446_low_6
Description: NF16446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16446_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 9496921 - 9497145
Alignment:
| Q |
18 |
ggatgttaccttacctttgcaacctcccgagttacggagctgttctgcaacaagtgcatctttatcttccatgcacggaatgctccatgatgagattgac |
117 |
Q |
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| T |
9496921 |
ggatgttaccttacctctgcaacctcccgagttacggagctgttctgcaacaagtgcatctttatcttccatgcacggaatgctccatgatgagattgac |
9497020 |
T |
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| Q |
118 |
tctttctgtaaacaggtataggtatagagtatattttgtaggtgatgttactaacacacacttgcacttacagttgcatgcctctcgcatagtcttttgc |
217 |
Q |
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| T |
9497021 |
tctttctgtaaacaggtataggtatagagtatattttgtgggtgatgttactaacacacacttgcacttacagttgcatgcctctcgcatagtcttttgc |
9497120 |
T |
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| Q |
218 |
aagccagttgaaaaccctctgttcc |
242 |
Q |
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| T |
9497121 |
aagccagttgaaaaccctctgttcc |
9497145 |
T |
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