View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16447_high_10 (Length: 277)
Name: NF16447_high_10
Description: NF16447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16447_high_10 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 81 - 265
Target Start/End: Original strand, 15052933 - 15053119
Alignment:
| Q |
81 |
atgaacaaaaagaagcgccaaatgagaggcaacataagtgtattttctgcaatttcggaaataattcatttctttaaatttataagttta--gttgataa |
178 |
Q |
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| T |
15052933 |
atgaacaaaaagaagcgccaaatgagaggcaacataagtgtattttctacaatttctgaaacaatttatttctttaaatttataagtttatagttgataa |
15053032 |
T |
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| Q |
179 |
gtcaagcttctccttgatgcatttcttcttactctattaattaattcaacaaaaataaaagaattaaatgccagcaaattcattcat |
265 |
Q |
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| T |
15053033 |
gtcaagcttctccttgatgcatttcttcttactctattaattaattcatcaaaaataaaagagttaaatgccagcaaattcattcat |
15053119 |
T |
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Target: scaffold0028 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 125992 - 126073
Alignment:
| Q |
1 |
ccgcagccaattgtcacacatacaggaagccagatgtcatacctggaggaagcaggtattctcttcttatattataggagat |
82 |
Q |
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| T |
125992 |
ccgcagccaattgtcacacatataggaaaccaaatgtcatgcctggaggaagcaggtattctcttcttatattataggagat |
126073 |
T |
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