View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16447_high_11 (Length: 248)
Name: NF16447_high_11
Description: NF16447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16447_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 23571034 - 23570821
Alignment:
| Q |
20 |
cttacccccctttataaataatttaaatgaccacgatgcatcaaatcgcaagtgatcaccacccccacctctctaagatgtatcctaacaatcacattat |
119 |
Q |
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| T |
23571034 |
cttacccccctttataaataatttaaatgaccacgatgcatcaaatcgcaagtgatcaccacccccacctctctaagatgtatcctaacaatcacattat |
23570935 |
T |
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| Q |
120 |
ccaccgattaccattgtaactgnnnnnnnaatctttgtcattagtcatcaaccatgtatcattgttgtcttatttgtccaaggtcattcatgtaccattt |
219 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23570934 |
ccaccgattaccattgtaaccg-ttttttaatctttgtcattagtcatcaaccatgtatcattgttgtcttatttgtccaaggtcattcatgtaccattt |
23570836 |
T |
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| Q |
220 |
taaccttattcatct |
234 |
Q |
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||||||||||||||| |
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| T |
23570835 |
taaccttattcatct |
23570821 |
T |
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