View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16447_high_12 (Length: 245)
Name: NF16447_high_12
Description: NF16447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16447_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4555419 - 4555649
Alignment:
| Q |
1 |
taatcagaacgttgattcctttgtactgctaacaaatcactctgtaagtttctatgcatgctacagctacaaaatgttggatcatgatttgacattattt |
100 |
Q |
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| T |
4555419 |
taatcagaatgttgattcctttgtactgctaacaaatcactctgtaagtttctatgcatgctacagctaaaaaatgttggatcatgatttgacattattt |
4555518 |
T |
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| Q |
101 |
ctcaaacacaattttttattatacattatgctaattaaatcagacgatttatattctgactttagaaaattgaattcaaaatctatactcgaaatgagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
4555519 |
ctcaaacacaattttttattatacattatgctaattaaatcagacgatttatattctgactttagaaaattgaattcaaaatttatactcggaatgagtc |
4555618 |
T |
|
| Q |
201 |
gtctgatttttatctaattaacgatgatgtc |
231 |
Q |
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||||||| |||||||||||||| || ||||| |
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| T |
4555619 |
gtctgatctttatctaattaacaataatgtc |
4555649 |
T |
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