View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16447_high_4 (Length: 362)
Name: NF16447_high_4
Description: NF16447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16447_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 10779630 - 10779983
Alignment:
| Q |
1 |
attattcttaaattgatcgattttagtgtttaagtaannnnnnnnaggaatattgtttgaaatcactattaggcgtaactaaccataacaagttaaataa |
100 |
Q |
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| T |
10779630 |
attagtcttaaattgatcgattttagtgtttaagtaattttttttaggaatattgtttgaa-tcactattaggcgtaactaaccataacaagttaaataa |
10779728 |
T |
|
| Q |
101 |
ttcatctcaccatgactaattaaccaaattttacttgaccaaa----annnnnnnnaccaaattttatatgattaattaataaggagttattcattatct |
196 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10779729 |
ttcatctcactatgactaattaaccaaattttacttgaccaatttttattttttttaccaaattttatatgattaattgataaggagttattcattatct |
10779828 |
T |
|
| Q |
197 |
ttttttagtctgtatatgagtaaccagcnnnnnnnnnnnnnnn---cttctttctaattgattatcttagtgagagtaagactaactgattagaaggaaa |
293 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10779829 |
ttttttagtctgtatatgaataaccagcttgttggtttttttttttcttctttctaattgattatcttagtgagagtaagactaactgattagaaggaaa |
10779928 |
T |
|
| Q |
294 |
aattaactttcatcaattgtaataatgattaccaatagtattagaacaaataact |
348 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10779929 |
aattaattttcatcaattgtaataatgattaccaatagtattagaacaaataact |
10779983 |
T |
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