View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16447_low_3 (Length: 370)
Name: NF16447_low_3
Description: NF16447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16447_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 28832804 - 28832452
Alignment:
| Q |
1 |
caataacttgaaaggaacgtacatggtaccaaaattattaacctgaaatacacaataaatatgacaataaactttttatggaaaagtgataacatagtac |
100 |
Q |
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| T |
28832804 |
caataacttgaaaggaacgtacatggtaccaaaattattaacctgaaatacacaataaatatgacaataaactttttatggaaaagtgataacatagtac |
28832705 |
T |
|
| Q |
101 |
acgcaaccatggatggagggggcatgctaaaaacaataatgaattcaaaacattcatatctatccataactttgaannnnnnnatgaatgtggatatgga |
200 |
Q |
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| T |
28832704 |
acgcaaccatggatggagggggcatgctaaaaacaataatgaattcaaaatatccatatctatccataactttgaatttttttatgaatgtggatatgga |
28832605 |
T |
|
| Q |
201 |
caaactcttaggttcaaagaatgc----ataaaatcaaagcttggtgatctcaaatttaattagttaggccttactggaaattcagattttgaagacaat |
296 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
28832604 |
caaactcttaggttcaaagaatgcatatataaaatcaaagcttggtgatctcaaatttaattagttaggccttactagaaattcagatttggaagacaat |
28832505 |
T |
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| Q |
297 |
ttcaattaaagaaagcctatgcattcagaaaggaaaatagataaagtcacaag |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28832504 |
ttcaattaaagaaagcctatgcattcagaaaggaaaatagataaagtcacaag |
28832452 |
T |
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