View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16447_low_9 (Length: 321)
Name: NF16447_low_9
Description: NF16447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16447_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 4555617 - 4555925
Alignment:
| Q |
1 |
tcgtctgatttttatctaattaacaataatgtcgatttcatgactgcagtgactttgtgaccgcagaaaacgcagatttaaaatgaataaattaaaaatt |
100 |
Q |
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| T |
4555617 |
tcgtctgatctttatctaattaacaataatgtcgatttcatgactgcagtgactttgtgaccgcagaaaacgcagacttaaaatgaataaattaaaaatt |
4555716 |
T |
|
| Q |
101 |
gctagtaacttgcttgctttacaaactttatgagcgttataaaaccaacttcagcgttatttcttgtagttgaagctacaaactcttctactttgctgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4555717 |
gctagtaacttgcttgctttacaaactttatgagcgttacaaaaccaacttcagcgttatttcttgtagttgaagctacaaattcttctactttgctgat |
4555816 |
T |
|
| Q |
201 |
ttgatatttatgtgaaccagaaggcaatgttgttcgcaactgcattccgctttgtgggaggtaaaggagacattcaagtgtgctatccatttgttgaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4555817 |
ttgatatttatgtgaaccagaaggcaatgttgttcgcaactgcattccgctttgtgggaggtaaaggagacattcaagtgtgctatccatttgttgaaaa |
4555916 |
T |
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| Q |
301 |
ggatgatga |
309 |
Q |
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||||||||| |
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| T |
4555917 |
ggatgatga |
4555925 |
T |
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