View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16448_high_3 (Length: 471)
Name: NF16448_high_3
Description: NF16448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16448_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 467
Target Start/End: Complemental strand, 32572604 - 32572144
Alignment:
| Q |
7 |
gcagcaccttcgaaaggaaacattgtagcggcagcaatattgtacccactaagttgaagaagatcatgaagttttggtagcggtggagatatttgaaatt |
106 |
Q |
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| T |
32572604 |
gcagcaccttcgaaaggaaacattgtagcggcagcaatattgtacccactaagttgaagaagatcatgaagttttggtagtggtggagatatttgaaatt |
32572505 |
T |
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| Q |
107 |
caccaatactaggaacagcttgagaggcagcaattgaaggagcagcataaaaatctcgaaaatgttgtccattaatatatctataaggcaccatcatggt |
206 |
Q |
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| T |
32572504 |
caccaatactaggaacagcttgagatgcagcaattgaaggagcagcataacaatctcgaaaatgttgtccattaatatatctataaggcatcatcatggt |
32572405 |
T |
|
| Q |
207 |
attgttgaccatgttcaagaaaggattattattaggccaagtacagttcataccataagatccataactttcagagcggtgaagaggtgtgaaaggttgg |
306 |
Q |
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| T |
32572404 |
attgttgaccatgttcaagaaaggattattattaggccaaatacagttcataccataagatccataactttcagagcggtgaagaggtgtgaaaggttgg |
32572305 |
T |
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| Q |
307 |
gtcattggcaatgcataaggtggtgatacaatgctagcattcccacgtactactgtggtgcttgtactacttgagtttgttggannnnnnnnngtgatca |
406 |
Q |
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||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||| ||||||| |
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| T |
32572304 |
gtcattgccaatgcataaggtggtggtacgatgctagcattcccacgtgctactgttgtgctggtagtacttgagtttgttggatttttttttgtgatca |
32572205 |
T |
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| Q |
407 |
taggcaatccatgattatgtttgccttcatatgaaacaattacatatttcggattctgtgc |
467 |
Q |
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| T |
32572204 |
taggcaatccatgattatgtttgccttcatatgaaacaattacatatttcggattctgtgc |
32572144 |
T |
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