View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16448_low_1 (Length: 746)
Name: NF16448_low_1
Description: NF16448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16448_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 18 - 731
Target Start/End: Complemental strand, 42213312 - 42212570
Alignment:
| Q |
18 |
agctatcatcctaaataaggatcagcaacacactgttatattggtttaaccaaagaatcataagcataactaccaatttgatacaataaattaaagaaaa |
117 |
Q |
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| T |
42213312 |
agctatcatcctaaataaggatcagcaacacactgttatattggtttaaccaaagaatcataagcataactaccaatttgatacaataaattaaagaaaa |
42213213 |
T |
|
| Q |
118 |
-----------tctctcaagacaagacatttactagctaccatcttggaggagcagaacaataattaatgaaaaataagaaacatattaatattatcact |
206 |
Q |
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| T |
42213212 |
acaaatgaaaatctctcaagacaagacatttactagctaccatcttggaggagcagaacaataattaatgaaaaataagaaacatattaatattatcact |
42213113 |
T |
|
| Q |
207 |
catataagtataaataaactttaacaaagaacaaaatatactattggacccaaaatgttaacaagggaaaataaaactcagctaagtccatgatgaccga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213112 |
catataagtataaataaactttaacaaagaacaaaatatactattggacccaaaatgttaacaagggaaaataaaactcagctaagtccatgatgaccga |
42213013 |
T |
|
| Q |
307 |
tgaggaagtcaaattgtagaacaggatgatatcttcataattgaacaataataatt-nnnnnnnnntgtggaacaaactgtaaagtataggataagttgg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42213012 |
tgaggaagtcaaattgtagaacaggatgatatcttcataattgaacaataataattaaaaaaaaaatgtggaacaaactgtaaagtataggataagttgg |
42212913 |
T |
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| Q |
406 |
attaagatagcacagctaggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttcatcaaacaagcaaattacacgtgaattgcagtg |
505 |
Q |
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| T |
42212912 |
attaagatagcacagctaggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttcatcaaacaagcaaattacacatgaattgcagtg |
42212813 |
T |
|
| Q |
506 |
tgaaatggataacaattaacatcatgttacaaattcacctatggtttttactatctatttattcacacatatttattga-----------------ttat |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42212812 |
tgaaatggataacaattaacatcatgttacaaattcacctatggtttttactatctatttattcacacatatttattgattatgtcatatcctatcttat |
42212713 |
T |
|
| Q |
589 |
atgtgatgctttttgtacttaaaactaggtaccgataaatagaattcgtcttatgattctaccaaaacaaaaaattcacaaattgatgatcaatactcag |
688 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212712 |
atgtgatgctttttgtacttaaaactaggtaccaataaatagaattcgtcgtatgattctaccaaaacaaaaaattcacaaattgatgatcaatactcag |
42212613 |
T |
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| Q |
689 |
taaatctgcataattagatgaacttaccgagctaataacatat |
731 |
Q |
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| T |
42212612 |
tagatctgcataattagatgaacttaccgagctaataacatat |
42212570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 375 - 579
Target Start/End: Complemental strand, 42205753 - 42205553
Alignment:
| Q |
375 |
ggaacaaactgtaaagtataggataagttggattaagatagcacagct--aggggaaaaattaatcaatctaaaagtgcaaataaatctgtgaaatgttc |
472 |
Q |
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||||| |||||| |||||||||||| |||||||||||||| || | | | |||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
42205753 |
ggaactaactgtgaagtataggataggttggattaagatatcatatcacaactagaaaaaataatcaatc-aaaagtgcaaataaatctgtgaaatgttc |
42205655 |
T |
|
| Q |
473 |
atcaaacaagcaaattacacgtgaattgcagtgtgaaatggataacaattaacatcatgttacaaattcaccta---tggtttttactatctatttattc |
569 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||| || |||| ||||||||||||||||| | ||||| ||||||||||||| |
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| T |
42205654 |
atcaaacaagcaaattacacatgaatt-cagtgtgaaatgga-------tatcatcgtgttacaaattcacctaattaaggttttattatctatttattc |
42205563 |
T |
|
| Q |
570 |
acacatattt |
579 |
Q |
| |
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|||||||||| |
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| T |
42205562 |
acacatattt |
42205553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 585 - 731
Target Start/End: Complemental strand, 42205525 - 42205383
Alignment:
| Q |
585 |
ttatatgtgatgctttttgtacttaaaactaggtaccgataaatagaattcgtcttatgattctac-caaaacaaaa-aattcacaaattgatgatcaat |
682 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||| ||||| ||||| ||||| ||| || |||||||||| |||||||||||||||||||||| |
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| T |
42205525 |
ttatatgtgatactttttgtacttaaaacttggtacc---aaataaaattcctcttaagatcttaggcaaaacaaaataattcacaaattgatgatcaat |
42205429 |
T |
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| Q |
683 |
actcagtaaatctgcataattagatgaacttaccgagctaataacatat |
731 |
Q |
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||||||| || ||| || |||||| || |||||||||||||||||| |
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| T |
42205428 |
tctcagtagatttgcgta---agatgagctcaccgagctaataacatat |
42205383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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