View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16448_low_12 (Length: 258)
Name: NF16448_low_12
Description: NF16448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16448_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 25 - 254
Target Start/End: Complemental strand, 26302417 - 26302197
Alignment:
| Q |
25 |
atatatttattccattatgatttgttttttaaaatttgttttgtgactttgaatatgtctaagaaaaagtctatatacattatcttaaatgtcaannnnn |
124 |
Q |
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| T |
26302417 |
atatatttattccattatgatttgttttttaaaatttgttttgtgactttgaatatgtctaagaaaaagtctatatacattatcttaaatgtcaattttt |
26302318 |
T |
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| Q |
125 |
nnncctttcggttaatgtaatacaagtttttccatttcaaacaactaaacaaatannnnnnnnccaggttgtttcatccataaattaaggggatatttat |
224 |
Q |
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| T |
26302317 |
tttcctttcggttaatgtaatacaattttttccatttcaaacaaata---------tttttttccaggttgtttcatccataaattaaggggatatttat |
26302227 |
T |
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| Q |
225 |
tgtgatcacttacttttgcctttgcttctc |
254 |
Q |
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| T |
26302226 |
tgtgatcacttacttttgcctttgcatctc |
26302197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 96 - 247
Target Start/End: Complemental strand, 13615891 - 13615741
Alignment:
| Q |
96 |
tatatacattatcttaaatgtcaannnnnnnncctttcggttaatgtaatacaagtttttccatttcaaacaactaaacaaatannnnnnnnccaggttg |
195 |
Q |
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| T |
13615891 |
tatatacattatcttaaatgtcaattttttt-cctttcggttaatgtaatacaattttttccatttcaaacaactaaacaattttttttttaccaggttg |
13615793 |
T |
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| Q |
196 |
tttcatccataaattaaggggatatttattgtgatcacttacttttgccttt |
247 |
Q |
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| T |
13615792 |
tttcatccataaattaaggggatatttattgtgatcacttacttttgccttt |
13615741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 13615987 - 13615908
Alignment:
| Q |
26 |
tatatttattccattatgatttgttttttaaaatttgttttgtgactttgaatatgtctaagaaaaagtctatatacatt |
105 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13615987 |
tatatttattcccttatgatttgttttttaaaatttgttttgtgactttgaatatgtctaagaaaaagtctatatacatt |
13615908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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