View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16448_low_3 (Length: 600)
Name: NF16448_low_3
Description: NF16448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16448_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 21709020 - 21708974
Alignment:
| Q |
312 |
ggaaaacgagtttgagtatttgcaattgcggaagcatgacctggttc |
358 |
Q |
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| T |
21709020 |
ggaaaacgagtttgagtatttgcaattgcggaagcatgacctggttc |
21708974 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 364 - 430
Target Start/End: Original strand, 21713523 - 21713589
Alignment:
| Q |
364 |
tattggtgagatgaactatgtctatcatcacattcaccaaatatatatttcagctcaggagcttttg |
430 |
Q |
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| T |
21713523 |
tattggtgagatgaatgatgttcatgatcacattcaccaaatatatatttcagctcatgaccttttg |
21713589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 423
Target Start/End: Complemental strand, 21706052 - 21705949
Alignment:
| Q |
318 |
cgagtttgagtatttgcaattgcggaagcatgacctggttctggtatattggtgagatgaactatgtctatcatcacattcaccaaatatatatttcagc |
417 |
Q |
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| T |
21706052 |
cgagattgagtactttcagttgaggaagcatgatgtggttgtggtattt--gtgagaagaatgatgttcatgatcacattcaccaaatatatatttcagc |
21705955 |
T |
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| Q |
418 |
tcagga |
423 |
Q |
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| T |
21705954 |
tcagga |
21705949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 583
Target Start/End: Complemental strand, 21708979 - 21708941
Alignment:
| Q |
545 |
tggttaccaaacaacattttgaggacatgaagtttgaac |
583 |
Q |
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| T |
21708979 |
tggttcccaaacaacattttgaggacatgaagtttgaac |
21708941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 11171469 - 11171432
Alignment:
| Q |
181 |
aaaagtttcggattatataatctgaaaacttttaaaat |
218 |
Q |
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| T |
11171469 |
aaaagtttcggattatataatctgaaacctttcaaaat |
11171432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 21698311 - 21698239
Alignment:
| Q |
191 |
gattatataatctgaaaacttttaaaatgaagttcagattcaataatctgaacgagggtattttcgaaaagtt |
263 |
Q |
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| T |
21698311 |
gattatataatctaaaaacgttcaaaaagaaattcatattatacaatcagaacgaggatattttcgaaaagtt |
21698239 |
T |
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