View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16448_low_8 (Length: 341)

Name: NF16448_low_8
Description: NF16448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16448_low_8
NF16448_low_8
[»] chr5 (9 HSPs)
chr5 (16-341)||(1162354-1162679)
chr5 (107-243)||(1850468-1850604)
chr5 (26-333)||(40412480-40412778)
chr5 (85-162)||(40419467-40419544)
chr5 (247-306)||(1850781-1850840)
chr5 (193-333)||(39880558-39880689)
chr5 (39-232)||(38988459-38988658)
chr5 (17-83)||(39400916-39400982)
chr5 (295-341)||(40419663-40419709)
[»] chr4 (1 HSPs)
chr4 (88-208)||(25911041-25911161)
[»] chr8 (1 HSPs)
chr8 (107-197)||(34401891-34401981)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 1162679 - 1162354
Alignment:
Q  16 cagtttgtgcattttataaaggaactagttcctggccgcgaagaatctctttaagataagcaacttgtttttctcatgatacatttgtctgtcaattatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1162679 cagtttgtgcattttataaaggaactagttcctggccgcgaagaatctctttaagataaacaacttgtttttctcatgatacatttgtctgtcaattatg 1162580  T
Q  116 agattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagcttgaaaatta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162579 agattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagcttgaaaatta 1162480  T
Q  216 ttgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttatacaactcttgca 315  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162479 ttgtctcaaaccccttctcaatctctctatacaatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttatacaactcttgca 1162380  T
Q  316 atcaaacatggctagttttacttctt 341  Q
    ||||||||||||||||||||||||||    
T  1162379 atcaaacatggctagttttacttctt 1162354  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 1850468 - 1850604
Alignment:
Q  107 tcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagct 206  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850468 tcaattatgagattgctgaatttgctgattgcatttagatgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagct 1850567  T
Q  207 tgaaaattattgtctcaaaccccttctcaatctctct 243  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1850568 tgaaaattattgtctcaaaccccttcgcaatctctct 1850604  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 333
Target Start/End: Original strand, 40412480 - 40412778
Alignment:
Q  26 attttataaaggaactagttcctggccgcgaagaatctcttt--aagataagcaacttg-tttttctcatgatacatttgtctgtcaattatgagattgc 122  Q
    ||||||||||||||||||||||||||  | ||||||||||||  ||||||||||||||| |||||||  |||||||||||||  ||||||||||||        
T  40412480 attttataaaggaactagttcctggctactaagaatctctttaaaagataagcaacttgttttttcttgtgatacatttgtccatcaattatgaga---- 40412575  T
Q  123 tgaatttgctgattgcatttatacgacattttgagatgttcagtt------atatcattataggctactcaagttg-------ttacaacacgagcttga 209  Q
         ||||||||| || ||||| || ||| |||| |||||||||      |||||||||||||||| | ||||||       |||||||| ||||||||    
T  40412576 -----ttgctgattacaattatatgatattctgaggtgttcagttatatcaatatcattataggctattgaagttgttgcaacttacaacatgagcttga 40412670  T
Q  210 aaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttatacaact 309  Q
    |||||||||||| ||||||| |||||     | ||   ||     ||||||||||||||||||| ||||||||||||||||    |||||||||||||||    
T  40412671 aaattattgtcttaaacccc-tctca---ggttta---aa-----tctcaaagccttagggatgtagattttgcagcaaaa----ctggtttatacaact 40412754  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 40419467 - 40419544
Alignment:
Q  85 tttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgtt 162  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  40419467 tttctcatgatacatttgtccatcaattatgagattgctgaatttgctgattgcaattatacgacattttgaggtgtt 40419544  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 1850781 - 1850840
Alignment:
Q  247 caatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttataca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850781 caatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttataca 1850840  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 333
Target Start/End: Original strand, 39880558 - 39880689
Alignment:
Q  193 ttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaact 292  Q
    |||||||| |||||||||||||||||||| |||||||||| |||||||    |  ||||     ||||||||||||||||| ||||||||||||||||      
T  39880558 ttacaacatgagcttgaaaattattgtcttaaaccccttcacaatctcaggtttaaatc-----tcaaagccttagggatgtagattttgcagcaaaa-- 39880650  T
Q  293 ggctggtttatacaactcttgcaatcaaacatggctagttt 333  Q
      ||||||||||||||||||||| |||||||||||||||||    
T  39880651 --ctggtttatacaactcttgcattcaaacatggctagttt 39880689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 232
Target Start/End: Original strand, 38988459 - 38988658
Alignment:
Q  39 actagttcctggccgcgaagaatctctttaa--gataagcaacttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgatt 136  Q
    |||||||||||||  ||||||||||||||||  ||||||||||||||||||||  |||||||||||||  ||||||||||||          ||||||||    
T  38988459 actagttcctggctacgaagaatctctttaaaagataagcaacttgtttttcttgtgatacatttgtccatcaattatgaga---------atgctgatt 38988549  T
Q  137 gcatttatacgacattttgagatgttcagtt------atatcattataggctactcaagttg-------ttacaacacgagcttgaaaattattgtctca 223  Q
    ||| ||||| |||||| |||| |||||||||      |||||||||||||||| | ||||||       |||||||| ||||||||| |||||||||| |    
T  38988550 gcaattatatgacattatgaggtgttcagttatatcaatatcattataggctattgaagttgttacaacttacaacatgagcttgaacattattgtctta 38988649  T

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Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 39400916 - 39400982
Alignment:
Q  17 agtttgtgcattttataaaggaactagttcctggccgcgaagaatctctttaagataagcaacttgt 83  Q
    |||||||| |||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||    
T  39400916 agtttgtgtattttataaaggaactagttcctggctgcaaagaatctttttaagataaccaacttgt 39400982  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 40419663 - 40419709
Alignment:
Q  295 ctggtttatacaactcttgcaatcaaacatggctagttttacttctt 341  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||||    
T  40419663 ctggtttatataactcttgcactcaaatatggctagttttacttctt 40419709  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 25911161 - 25911041
Alignment:
Q  88 ctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactca 187  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||| ||||||||||||| |    
T  25911161 ctcatgatacatttgtccatcaattatgagattgctgaatttgctgattgcaattatatgatattttgaggtgttcagttatattattataggctactga 25911062  T
Q  188 agttgttacaacacgagcttg 208  Q
    |||||||||| || |||||||    
T  25911061 agttgttacaccatgagcttg 25911041  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 34401891 - 34401981
Alignment:
Q  107 tcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttaca 197  Q
    ||||||||||||| | |||| ||||||||| || ||||| |||||||||||  |||||||||||| ||||||||||||| |||||||||||    
T  34401891 tcaattatgagatgggtgaaattgctgatttcaattatatgacattttgaggagttcagttatattattataggctactgaagttgttaca 34401981  T

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