View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16449_high_1 (Length: 517)

Name: NF16449_high_1
Description: NF16449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16449_high_1
NF16449_high_1
[»] chr8 (13 HSPs)
chr8 (155-414)||(5662583-5662842)
chr8 (10-148)||(5657613-5657751)
chr8 (138-278)||(27541539-27541679)
chr8 (138-278)||(14678001-14678142)
chr8 (138-278)||(5657771-5657912)
chr8 (138-278)||(31100852-31100993)
chr8 (136-196)||(24788096-24788156)
chr8 (137-281)||(8158460-8158604)
chr8 (138-196)||(23738657-23738715)
chr8 (136-192)||(24787162-24787220)
chr8 (133-191)||(33689362-33689420)
chr8 (41-79)||(5686812-5686850)
chr8 (36-76)||(5718951-5718991)
[»] chr2 (7 HSPs)
chr2 (139-291)||(24454516-24454668)
chr2 (137-278)||(23348960-23349102)
chr2 (138-278)||(10328871-10329013)
chr2 (138-278)||(18355293-18355434)
chr2 (161-278)||(12741711-12741829)
chr2 (200-276)||(997882-997958)
chr2 (225-274)||(1615899-1615948)
[»] chr5 (8 HSPs)
chr5 (144-303)||(22004412-22004571)
chr5 (138-278)||(22009508-22009649)
chr5 (137-278)||(9043801-9043943)
chr5 (138-278)||(7473469-7473610)
chr5 (139-278)||(30442527-30442667)
chr5 (138-196)||(19085440-19085498)
chr5 (138-302)||(30463006-30463172)
chr5 (161-196)||(26841027-26841062)
[»] scaffold0096 (1 HSPs)
scaffold0096 (136-297)||(27408-27569)
[»] chr3 (18 HSPs)
chr3 (145-262)||(47763911-47764028)
chr3 (137-303)||(24761853-24762020)
chr3 (138-278)||(2549937-2550077)
chr3 (138-302)||(24815915-24816080)
chr3 (303-414)||(31688029-31688140)
chr3 (137-278)||(31685076-31685218)
chr3 (303-414)||(31896727-31896838)
chr3 (303-414)||(31912436-31912547)
chr3 (138-276)||(17681767-17681905)
chr3 (138-297)||(12538597-12538756)
chr3 (303-414)||(31946084-31946195)
chr3 (138-278)||(53973266-53973407)
chr3 (136-278)||(37982347-37982490)
chr3 (138-303)||(53352716-53352882)
chr3 (145-278)||(19882091-19882225)
chr3 (138-297)||(53027713-53027873)
chr3 (185-237)||(53351956-53352008)
chr3 (138-170)||(38612019-38612051)
[»] scaffold0003 (2 HSPs)
scaffold0003 (303-410)||(36796-36903)
scaffold0003 (303-414)||(42974-43087)
[»] chr7 (5 HSPs)
chr7 (134-278)||(1262084-1262229)
chr7 (138-278)||(43071362-43071503)
chr7 (137-278)||(26909961-26910103)
chr7 (137-278)||(48849787-48849929)
chr7 (366-414)||(11649475-11649523)
[»] scaffold0035 (1 HSPs)
scaffold0035 (130-278)||(35055-35204)
[»] scaffold0045 (1 HSPs)
scaffold0045 (138-278)||(11614-11755)
[»] chr4 (5 HSPs)
chr4 (138-278)||(29863341-29863482)
chr4 (137-213)||(12506435-12506511)
chr4 (136-213)||(38014347-38014415)
chr4 (161-196)||(24260243-24260278)
chr4 (141-170)||(10195656-10195685)
[»] chr6 (8 HSPs)
chr6 (145-278)||(33045411-33045545)
chr6 (137-247)||(3065697-3065807)
chr6 (303-414)||(27444274-27444387)
chr6 (138-266)||(10092512-10092641)
chr6 (145-304)||(8976411-8976571)
chr6 (136-196)||(16246700-16246760)
chr6 (139-196)||(4660238-4660295)
chr6 (145-192)||(30908436-30908483)
[»] scaffold0596 (1 HSPs)
scaffold0596 (138-278)||(654-795)
[»] scaffold0157 (1 HSPs)
scaffold0157 (137-213)||(13966-14042)
[»] chr1 (4 HSPs)
chr1 (136-302)||(25223217-25223385)
chr1 (303-369)||(7608113-7608179)
chr1 (142-196)||(50990911-50990965)
chr1 (303-369)||(31771101-31771167)
[»] scaffold0475 (1 HSPs)
scaffold0475 (161-196)||(7536-7571)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 155 - 414
Target Start/End: Original strand, 5662583 - 5662842
Alignment:
Q  155 tcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattc 254  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5662583 tcctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattc 5662682  T
Q  255 atctcatcctttgatttaatctgacttctaactttcatttccccatgccacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgt 354  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5662683 atctcatcctttgatttaatctgacttcaaactttcatttccccatgccacaattcaaattcaagtttaccgtgcattgtaaatgacaaacaattaatgt 5662782  T
Q  355 taactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5662783 taactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 5662842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 5657613 - 5657751
Alignment:
Q  10 ataatactttattttccaatataaataaaaaatccatattttgttaaatatgaaaatgttggtgagctaggttaactttcattcactttatcactaatta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5657613 ataatactttattttccaatataaataaaaaatccatattttgttaaatatgaaaatgttggtgagctaggttaattttcattcactttatcactaatta 5657712  T
Q  110 agcatgacaaaaatttccttattatgaaatcatacttat 148  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5657713 agcatgacaaaaatttccttattatgaaatcatacttat 5657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 27541679 - 27541539
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcat 237  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||   || ||| |||| |||||    ||||| ||||||||    
T  27541679 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatctcat 27541580  T
Q  238 catttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||||| |||| |||||||||||||||| ||||||||    
T  27541579 catttggctaagcatgcatctcatcctttgatctaatctga 27541539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 14678142 - 14678001
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  ||||||||||||||||||||| |||||||||||||| ||  ||| ||| || || |||||  | ||||| |||||||    
T  14678142 atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 14678043  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    ||||||||||| |||| |||||||||||||||| ||||||||    
T  14678042 tcatttggctaagcatgcatctcatcctttgatctaatctga 14678001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 278
Target Start/End: Original strand, 5657771 - 5657912
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  ||||| |||||||||||||||||||||||||||||| ||  ||| ||| || || |||||  | ||||| |||||||    
T  5657771 atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctca 5657870  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||| || |||| |||||||||||||||| ||||||||    
T  5657871 tcatttggttaagcatgcatctcatcctttgatctaatctga 5657912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 31100993 - 31100852
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||| ||  ||| ||| || || |||||  | ||||| |||||||    
T  31100993 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctca 31100894  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||| || ||||  ||||||||||||||| ||||||||    
T  31100893 tcatttggttaagcatgtatctcatcctttgatctaatctga 31100852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 24788156 - 24788096
Alignment:
Q  136 aaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 196  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24788156 aaatcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaaccta 24788096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 281
Target Start/End: Original strand, 8158460 - 8158604
Alignment:
Q  137 aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctca 236  Q
    |||||||||||||||||||  |  |||||| ||||||| || ||||||| ||||||||||  | |||| ||||||||| ||| ||| ||||| ||||  |    
T  8158460 aatcatacttatatctaatttttgttaacaatgctaattaccttgcaaaacctaaacctaagtattttgggcgccaattaagcagggccgtttgatcaaa 8158559  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctgactt 281  Q
    | |  | ||||  |||||||||||||||||||| |||||||||||    
T  8158560 tgagctagctaatcattcatctcatcctttgatctaatctgactt 8158604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 23738657 - 23738715
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 196  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||| ||||    
T  23738657 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaacccta 23738715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 24787220 - 24787162
Alignment:
Q  136 aaatcatacttatatctaatccta--attaacattgctaatgactttgcaaaccctaaa 192  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||||||| ||||||    
T  24787220 aaatcatacttatatctaatcttataattaacattgctaatgactttgcaaatcctaaa 24787162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 33689420 - 33689362
Alignment:
Q  133 atgaaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaa 191  Q
    |||| ||||||| ||||||||||| |  ||||||||||||||||||||||| |||||||    
T  33689420 atgatatcatacctatatctaatctttgttaacattgctaatgactttgcagaccctaa 33689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 5686812 - 5686850
Alignment:
Q  41 atccatattttgttaaatatgaaaatgttggtgagctag 79  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  5686812 atccatatttttttaaatatgaaaatcttggtgagctag 5686850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 5718951 - 5718991
Alignment:
Q  36 aaaaaatccatattttgttaaatatgaaaatgttggtgagc 76  Q
    |||| ||||||||||| | ||||||||||||||||||||||    
T  5718951 aaaatatccatattttttaaaatatgaaaatgttggtgagc 5718991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 139 - 291
Target Start/End: Original strand, 24454516 - 24454668
Alignment:
Q  139 tcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatc 238  Q
    |||||||||||||||||| ||||||||||||||||   | ||||||| |||||||||| |||||||||||||||| |||||||| ||||| |||||||||    
T  24454516 tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaacaaggagggccgttggatctcatc 24454615  T
Q  239 atttggctaggcattcatctcatcctttgatttaatctgacttctaactttca 291  Q
    |||||||| | |||||||||||||||||||| |||||||||||| ||||||||    
T  24454616 atttggcttgacattcatctcatcctttgatctaatctgacttcaaactttca 24454668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 137 - 278
Target Start/End: Complemental strand, 23349102 - 23348960
Alignment:
Q  137 aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctc 235  Q
    |||||||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| || || |||||  | ||||| ||||||    
T  23349102 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 23349003  T
Q  236 atcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||||||| |||| |||||||||||||||| ||||||||    
T  23349002 atcatttggctaagcatgcatctcatcctttgatctaatctga 23348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 10329013 - 10328871
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgc-caatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||| ||| ||  |  || |||||  | ||||| |||||||    
T  10329013 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctca 10328914  T
Q  237 tcatttggctaggcattcatctcatcc-tttgatttaatctga 278  Q
    ||||||||||| |||| |||||||||| |||||| ||||||||    
T  10328913 tcatttggctaagcatgcatctcatccttttgatctaatctga 10328871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 18355434 - 18355293
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaa-ggaggtccgttagatctc 235  Q
    ||||||||||||| ||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| || || ||| |||||| |||| ||||||    
T  18355434 atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggt-cgttggatctc 18355336  T
Q  236 atcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||||||| |||| ||||||||||||| || ||||||||    
T  18355335 atcatttggctaagcatgcatctcatcctttaatctaatctga 18355293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 12741711 - 12741829
Alignment:
Q  161 ttaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatc--aaggaggtccgttagatctcatcatttggctaggcattcatct 258  Q
    ||||||||||||||||  |||||||||||||||||| ||  ||| ||| ||||    ||||||| ||||| |||||||||||||||||| |||| |||||    
T  12741711 ttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggagg-ccgttggatctcatcatttggctaagcatgcatct 12741809  T
Q  259 catcctttgatttaatctga 278  Q
    ||||||||||| ||||||||    
T  12741810 catcctttgatctaatctga 12741829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 997882 - 997958
Alignment:
Q  200 tttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattcatctcatcctttgatttaatct 276  Q
    ||||||||||||||| ||||| | ||||| ||||  ||||| || ||| |||||||||||||||||| || ||||||    
T  997882 tttttaggcgccaattaaggatggccgtttgatcaaatcatctgactaagcattcatctcatcctttcatctaatct 997958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 1615948 - 1615899
Alignment:
Q  225 cgttagatctcatcatttggctaggcattcatctcatcctttgatttaat 274  Q
    |||| |||| ||||||||||||| |||| |||||||||||||||| ||||    
T  1615948 cgttggatcgcatcatttggctaagcatgcatctcatcctttgatctaat 1615899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 144 - 303
Target Start/End: Complemental strand, 22004571 - 22004412
Alignment:
Q  144 cttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttg 243  Q
    ||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||    
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctcatcatttg 22004472  T
Q  244 gctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcc 303  Q
    |||  |||||||| |||||||||||| |||| | ||||| || |||||||||||||||||    
T  22004471 gctcagcattcatatcatcctttgatctaatgtcacttcaaagtttcatttccccatgcc 22004412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 22009649 - 22009508
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||||| ||  ||| ||| || || |||||  | ||||| |||||||    
T  22009649 atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 22009550  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    ||||||||||| |||| |||||||||||||||| ||||||||    
T  22009549 tcatttggctaagcatgcatctcatcctttgatctaatctga 22009508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 9043801 - 9043943
Alignment:
Q  137 aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctc 235  Q
    |||||||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| || || |||||  | ||||| ||||||    
T  9043801 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 9043900  T
Q  236 atcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||||||| |||| |||||||||||||||| ||||||||    
T  9043901 atcatttggctaagcatgcatctcatcctttgatctaatctga 9043943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 7473610 - 7473469
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| || || |||||  | ||||| |||||||    
T  7473610 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 7473511  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||| |||| |||| |||||||||||||||| ||||||||    
T  7473510 tcatttagctaagcatgcatctcatcctttgatctaatctga 7473469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 278
Target Start/End: Complemental strand, 30442667 - 30442527
Alignment:
Q  139 tcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcat 237  Q
    |||| ||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| ||||  |||||  | ||||| ||||||||    
T  30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 30442568  T
Q  238 catttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||||| |||| |||||||||||||||| ||||||||    
T  30442567 catttggctaagcatgcatctcatcctttgatctaatctga 30442527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 19085498 - 19085440
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 196  Q
    ||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||    
T  19085498 atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaaccta 19085440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 302
Target Start/End: Complemental strand, 30463172 - 30463006
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgc-aaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  |||||| ||||||| || |||| |||||||||||||||   |||| ||||||||| ||||||  ||||| ||||  |    
T  30463172 atcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaacctagccattttgggcgccaattaaggagagccgtttgatcaaa 30463073  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttca-tttccccatgc 302  Q
    | |  | |||| ||||||||||||||||||||| | || ||||||   ||||||| |||||||||||    
T  30463072 tgagctagctaagcattcatctcatcctttgatctcatttgacttggcactttcagtttccccatgc 30463006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 26841062 - 26841027
Alignment:
Q  161 ttaacattgctaatgactttgcaaaccctaaaccta 196  Q
    |||||||||||||||| |||||||||||||||||||    
T  26841062 ttaacattgctaatgattttgcaaaccctaaaccta 26841027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 136 - 297
Target Start/End: Original strand, 27408 - 27569
Alignment:
Q  136 aaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctc 235  Q
    ||||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||||| ||  ||| ||| |||| |||||  | ||||| ||||||    
T  27408 aaatcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctc 27507  T
Q  236 atcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccc 297  Q
    |||||||||||| |||| |||||||||||||||| |||| ||||||| ||||||||||||||    
T  27508 atcatttggctaagcatgcatctcatcctttgatctaatttgacttcaaactttcatttccc 27569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 47764028 - 47763911
Alignment:
Q  145 ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttgg 244  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||  ||||| |||    
T  47764028 ttatatctaatcctacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctgg 47763929  T
Q  245 ctaggcattcatctcatc 262  Q
    ||||||||||||||||||    
T  47763928 ctaggcattcatctcatc 47763911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 24762020 - 24761853
Alignment:
Q  137 aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctc 235  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||  ||| ||| || || ||| |  | ||||| ||||||    
T  24762020 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctc 24761921  T
Q  236 atcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcc 303  Q
    |||||||||||  |||| |||||||||||||||| |||| ||||||| |||||| |||||||||||||    
T  24761920 atcatttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcc 24761853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 138 - 278
Target Start/End: Original strand, 2549937 - 2550077
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||  ||| ||| || || |||||  | ||||| ||||| |    
T  2549937 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-a 2550035  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  2550036 tcatttggctaagcatgcatctcatcctttgatttaatctga 2550077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 138 - 302
Target Start/End: Original strand, 24815915 - 24816080
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||  ||| ||| || || | | |  | ||||| |||||||    
T  24815915 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctca 24816014  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgc 302  Q
    ||||||||||  |||| |||||||||||||||| |||| ||||||| |||||| ||||||||||||    
T  24816015 tcatttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgc 24816080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 31688029 - 31688140
Alignment:
Q  303 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg 402  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | |||||||||| |||||||||||||||||| ||||  ||| |||    
T  31688029 cacaattcaaattcaagtttacggtgcattgtaaatgacaaataattaatgttatcggtttccaataaagtgttgcatatccatcttattggaaacaatg 31688128  T
Q  403 gctctgacctaa 414  Q
    ||||||||||||    
T  31688129 gctctgacctaa 31688140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 31685076 - 31685218
Alignment:
Q  137 aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc--aatcaaggaggtccgttagatct 234  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||  ||| ||| ||  ||| | ||||| |||||  ||||    
T  31685076 aatcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggagg-ccgttgaatct 31685174  T
Q  235 catcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||    
T  31685175 catcatttggctaagcatgcatctcatcctttgatctaatctga 31685218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 31896838 - 31896727
Alignment:
Q  303 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg 402  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |  ||||||||| |||||||||||||||||| ||||  ||| |||    
T  31896838 cacaattcaaattcaagtttactgtgcattgtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatg 31896739  T
Q  403 gctctgacctaa 414  Q
    ||||||||||||    
T  31896738 gctctgacctaa 31896727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 31912547 - 31912436
Alignment:
Q  303 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg 402  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |  ||||||||| |||||||||||||||||| ||||  ||| |||    
T  31912547 cacaattcaaattcaagtttactgtgcattgtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatg 31912448  T
Q  403 gctctgacctaa 414  Q
    ||||||||||||    
T  31912447 gctctgacctaa 31912436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 17681767 - 17681905
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcat 237  Q
    ||||||||||||||||||| |  ||||||||| |||||| ||||||||||||||||||| ||  ||| ||| |||| ||||| || ||||| ||||||||    
T  17681767 atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcat 17681866  T
Q  238 catttggctaggcattcatctcatcctttgatttaatct 276  Q
    ||||||| || |||| |||||||||||||||| ||||||    
T  17681867 catttggttaagcatgcatctcatcctttgatctaatct 17681905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 138 - 297
Target Start/End: Complemental strand, 12538756 - 12538597
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcat 237  Q
    ||||||||||||||||||| |  ||||| || ||||||| ||||||||||||||||||| ||  ||| ||| |||| |||||  | ||||| ||||||||    
T  12538756 atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat 12538657  T
Q  238 catttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccc 297  Q
    |||||||||| |||| |||| ||||||||||| |||| | ||||| |||||||| |||||    
T  12538656 catttggctaagcatgcatcacatcctttgatctaatttaacttcaaactttcaattccc 12538597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 31946195 - 31946084
Alignment:
Q  303 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg 402  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||| |  ||||||||| |||||||||||||||||| ||||  ||| |||    
T  31946195 cacaattcaaattcaagtttactgtgcattgtaaatgacaaataatgaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatg 31946096  T
Q  403 gctctgacctaa 414  Q
    ||||||||||||    
T  31946095 gctctgacctaa 31946084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 53973407 - 53973266
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| || ||||||||  | ||||| |||||||    
T  53973407 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctca 53973308  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    ||||||||||| || | |||||||||||||||| ||||||||    
T  53973307 tcatttggctaagcctgcatctcatcctttgatctaatctga 53973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 136 - 278
Target Start/End: Original strand, 37982347 - 37982490
Alignment:
Q  136 aaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatct 234  Q
    ||||||||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| || || |||||  | ||||| |||||    
T  37982347 aaatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct 37982446  T
Q  235 catcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    ||||||||||||| |||| ||||||||||||| || ||||||||    
T  37982447 catcatttggctaagcatgcatctcatcctttaatctaatctga 37982490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 53352882 - 53352716
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||| |   ||| ||| || || | | |  | ||||| |||||||    
T  53352882 atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctca 53352783  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcc 303  Q
    ||||||||||  |  | ||||||||||||||||||||| ||||||| |||||| |||||| ||||||    
T  53352782 tcatttggctcagtgtgcatctcatcctttgatttaatttgacttcaaacttttatttcctcatgcc 53352716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 19882225 - 19882091
Alignment:
Q  145 ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatcatttg 243  Q
    |||||||||||| |  ||||||||||||||||  ||| |||||||||||||| ||  ||| ||| ||||  |||||  | ||||| ||||||||||||||    
T  19882225 ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 19882126  T
Q  244 gctaggcattcatctcatcctttgatttaatctga 278  Q
    |||| |||| |||||||||||||||| ||||||||    
T  19882125 gctaagcatgcatctcatcctttgatctaatctga 19882091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 297
Target Start/End: Complemental strand, 53027873 - 53027713
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggt---ccgttagatct 234  Q
    |||||||||||||||||||||  |||||| ||||||| ||||| ||||||||||||||| ||  ||| | | ||||  || || |    ||||| |||||    
T  53027873 atcatacttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaa--aatgatgctgaccgttggatct 53027776  T
Q  235 catcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccc 297  Q
    ||||||||||||  |||| |||||||||||||||| |||| ||||||| |||||| |||||||    
T  53027775 catcatttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccc 53027713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 53352008 - 53351956
Alignment:
Q  185 accctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcat 237  Q
    |||||||||||||||  |||||||||||||||||| |||||||| ||||||||    
T  53352008 accctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctcat 53351956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 38612051 - 38612019
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgc 170  Q
    ||||||||||| |||||||||||||||||||||    
T  38612051 atcatacttatttctaatcctaattaacattgc 38612019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 303 - 410
Target Start/End: Complemental strand, 36903 - 36796
Alignment:
Q  303 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg 402  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||  ||| |||    
T  36903 cacaattcaaattcaagtttacagtgcattgtaaatgacaaataattaatgttatcggtttccaatacagtgttgcatatccatctcattggaaacaatg 36804  T
Q  403 gctctgac 410  Q
    ||||||||    
T  36803 gctctgac 36796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 43087 - 42974
Alignment:
Q  303 cacaattcaaattaaagtttaccgtgcattgtaaat-gacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcg-aacca 400  Q
    ||||||||||||| |||||||| ||||||||||||| |||||| | ||||||||| | ||||  ||||||||||||||||||||| |||||| | ||| |    
T  43087 cacaattcaaattcaagtttacggtgcattgtaaattgacaaatagttaatgttatcggttttgaatacagtgttgcatatccatttcattgggaaacaa 42988  T
Q  401 tggctctgacctaa 414  Q
    ||||||||||||||    
T  42987 tggctctgacctaa 42974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 134 - 278
Target Start/End: Original strand, 1262084 - 1262229
Alignment:
Q  134 tgaaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagat 232  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||  ||| ||| || || |||||    ||||| |||    
T  1262084 tgaaatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggat 1262183  T
Q  233 ctcatcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||    
T  1262184 ctcatcatttggctaagcatgcatctcatcctttgatctaatctga 1262229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 43071503 - 43071362
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| ||| ||||  |||||  | ||||| |||||||    
T  43071503 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 43071404  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    ||||||||||| |||| |||||||||||||||| ||||||||    
T  43071403 tcatttggctaagcatgcatctcatcctttgatctaatctga 43071362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 278
Target Start/End: Complemental strand, 26910103 - 26909961
Alignment:
Q  137 aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctc 235  Q
    |||||||||||||||||||| |  |||||||||||||| ||||||||||||||||||||| ||   || ||| || || |||||  | || || |||||     
T  26910103 aatcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctt 26910004  T
Q  236 atcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||||||| |||| |||||||||||||||| ||||||||    
T  26910003 atcatttggctaagcatgcatctcatcctttgatctaatctga 26909961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 278
Target Start/End: Complemental strand, 48849929 - 48849787
Alignment:
Q  137 aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctc 235  Q
    |||||||||||||||||||| |  ||||||||||||||||||||| ||| |||||||||| ||  ||| ||| || || |||||   |  ||| ||||||    
T  48849929 aatcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctc 48849830  T
Q  236 atcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||||||| |||| |||||||||||||||| ||||||||    
T  48849829 atcatttggctaagcatgcatctcatcctttgatctaatctga 48849787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 11649523 - 11649475
Alignment:
Q  366 aatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa 414  Q
    |||||| |||||||||||||||||||||  |||||||||| ||||||||    
T  11649523 aatacaatgttgcatatccatctcattggaaaccatggctttgacctaa 11649475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 130 - 278
Target Start/End: Original strand, 35055 - 35204
Alignment:
Q  130 attatgaaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaa-ggaggtccgt 227  Q
    |||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||  ||| ||| || || ||| ||||||  ||    
T  35055 attatgcaatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggt-tgt 35153  T
Q  228 tagatctcatcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    | |||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  35154 tggatctcatcatttggctaagcatgcatctcatcctttgatctaatctga 35204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 11755 - 11614
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||  |  ||| | | || || |||||  | ||||| |||||||    
T  11755 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctca 11656  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||| || |||| |||||||||||||||||||||||||    
T  11655 tcatttggttaagcatgcatctcatcctttgatttaatctga 11614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 29863482 - 29863341
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||||||| |||||||| ||  ||| ||| || || |||||  | ||||| |||||||    
T  29863482 atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 29863383  T
Q  237 tcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    ||||||||||  |||| |||||||||||||||| ||||||||    
T  29863382 tcatttggctgagcatgcatctcatcctttgatctaatctga 29863341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 12506435 - 12506511
Alignment:
Q  137 aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa 213  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||| ||  ||| ||||||||    
T  12506435 aatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaataatttgggcgccaa 12506511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 38014347 - 38014415
Alignment:
Q  136 aaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa 213  Q
    ||||||||||||||||||||||||        ||||||||||||| |||| |||||||||||| ||||||||||||||    
T  38014347 aaatcatacttatatctaatccta--------tgctaatgactttacaaaacctaaacctaga-tttttaggcgccaa 38014415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 24260243 - 24260278
Alignment:
Q  161 ttaacattgctaatgactttgcaaaccctaaaccta 196  Q
    ||||||||||||||||||||||||||||||| ||||    
T  24260243 ttaacattgctaatgactttgcaaaccctaacccta 24260278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 170
Target Start/End: Original strand, 10195656 - 10195685
Alignment:
Q  141 atacttatatctaatcctaattaacattgc 170  Q
    ||||||||||||||||||||||||||||||    
T  10195656 atacttatatctaatcctaattaacattgc 10195685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 33045545 - 33045411
Alignment:
Q  145 ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc--aatcaaggaggtccgttagatctcatcattt 242  Q
    |||||||||||| |  |||||||||||||||||||||||||||||||||||| ||  ||| ||| ||  ||| | ||||| ||||| |||||||||||||    
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggagg-ccgttggatctcatcattt 33045447  T
Q  243 ggctaggcattcatctcatcctttgatttaatctga 278  Q
    || || |||| |||||||||||||||| ||||||||    
T  33045446 ggttaagcatgcatctcatcctttgatctaatctga 33045411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 3065697 - 3065807
Alignment:
Q  137 aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctca 236  Q
    |||||||||||||||||||| |  ||||||| |||||||||||||||||||||||||||| ||  ||| ||| |||| |||||  | ||||| |||||||    
T  3065697 aatcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctca 3065796  T
Q  237 tcatttggcta 247  Q
    |||||||||||    
T  3065797 tcatttggcta 3065807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 27444274 - 27444387
Alignment:
Q  303 cacaattcaaattaaagtttaccgtgcattgtaaa-tgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcg-aacca 400  Q
    ||||||||||||| |||||||| |||||||||||| ||||||| | ||||||||| | ||||  ||||||||||||||||||||| |||||| | ||| |    
T  27444274 cacaattcaaattcaagtttacggtgcattgtaaattgacaaatagttaatgttatcggttttgaatacagtgttgcatatccatttcattgggaaacaa 27444373  T
Q  401 tggctctgacctaa 414  Q
    ||||||||||||||    
T  27444374 tggctctgacctaa 27444387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 10092512 - 10092641
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca 236  Q
    ||||||||||||||||||| |  ||||||||| |||||||||||||||||||||| ||| ||  ||| ||| || || |||||  | ||||| |||||||    
T  10092512 atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctca 10092611  T
Q  237 tcatttggctaggcattcatctcatccttt 266  Q
    ||||||||||| |||| |||||||| ||||    
T  10092612 tcatttggctaagcatgcatctcattcttt 10092641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 8976411 - 8976571
Alignment:
Q  145 ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatc-aaggaggtccgttagatctcatcatttg 243  Q
    |||||||||||| |  |||| ||||||||||||||| ||||| ||||||||| ||  ||| ||| ||||   ||||  | ||||| |||||||| ||||     
T  8976411 ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattattta 8976510  T
Q  244 gctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcca 304  Q
    ||||  ||| |||||||||||||||| ||||||||   |  ||||||||||||||||||||    
T  8976511 gctaaacatgcatctcatcctttgatctaatctgatcgcagactttcatttccccatgcca 8976571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 16246700 - 16246760
Alignment:
Q  136 aaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 196  Q
    ||||||||||||||||||||| |  | ||||||||||||||||||||||||||||| ||||    
T  16246700 aaatcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatccta 16246760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 4660295 - 4660238
Alignment:
Q  139 tcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 196  Q
    |||||||||||| ||||| |  ||||||||||||||||||||||||||||||| ||||    
T  4660295 tcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaacccta 4660238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 30908483 - 30908436
Alignment:
Q  145 ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaa 192  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||||    
T  30908483 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaa 30908436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 278
Target Start/End: Original strand, 654 - 795
Alignment:
Q  138 atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa--tcaaggaggtccgttagatctc 235  Q
    ||||||||||||||| ||| |  ||||||||||||||||  |||||||||||||||||| ||  ||| | | ||||  | | ||||| ||||| ||||||    
T  654 atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggagg-ccgttggatctc 752  T
Q  236 atcatttggctaggcattcatctcatcctttgatttaatctga 278  Q
    |||||||||||| |||| |||||||||||||||| ||||||||    
T  753 atcatttggctaagcatgcatctcatcctttgatctaatctga 795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 14042 - 13966
Alignment:
Q  137 aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa 213  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||| ||  ||| ||||||||    
T  14042 aatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaataatttgggcgccaa 13966  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 302
Target Start/End: Original strand, 25223217 - 25223385
Alignment:
Q  136 aaatcatacttatatctaatcctaattaacattgctaatgactttgc-aaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatct 234  Q
    ||||||||||||||||||||| |  |||||| ||||||| || |||| |||||||||| ||||   |||| ||||||||| ||||||  ||||| ||||     
T  25223217 aaatcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaagctagccattttgggcgccaattaaggagagccgtttgatca 25223316  T
Q  235 catcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttca-tttccccatgc 302  Q
     || |  | |||| ||||||||||||||||||||| | || ||||||   ||||||| |||||||||||    
T  25223317 aatgagctagctaagcattcatctcatcctttgatctcatttgacttggcactttcagtttccccatgc 25223385  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 7608179 - 7608113
Alignment:
Q  303 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaata 369  Q
    |||||||||| || |||||||| ||| ||||||||||||||| |||||||||||   ||||||||||    
T  7608179 cacaattcaagttcaagtttacagtgtattgtaaatgacaaataattaatgttattggtttccaata 7608113  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 50990911 - 50990965
Alignment:
Q  142 tacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta 196  Q
    ||||||||||||||| |  ||||||||||| || |||||||||||||||||||||    
T  50990911 tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaaccta 50990965  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 31771167 - 31771101
Alignment:
Q  303 cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaata 369  Q
    |||||||||| || || ||||| ||| ||||||||||||||| |||||||||||   ||||||||||    
T  31771167 cacaattcaagttcaaatttacagtgtattgtaaatgacaaataattaatgttattggtttccaata 31771101  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 7571 - 7536
Alignment:
Q  161 ttaacattgctaatgactttgcaaaccctaaaccta 196  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7571 ttaacattgctaatgactttgcaaaccctaacccta 7536  T

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