View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16449_low_1 (Length: 517)
Name: NF16449_low_1
Description: NF16449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16449_low_1 |
 |  |
|
| [»] scaffold0096 (1 HSPs) |
 |  |  |
|
| [»] scaffold0003 (2 HSPs) |
 |  |  |
|
| [»] scaffold0035 (1 HSPs) |
 |  |  |
|
| [»] scaffold0045 (1 HSPs) |
 |  |  |
|
| [»] scaffold0596 (1 HSPs) |
 |  |  |
|
| [»] scaffold0157 (1 HSPs) |
 |  |  |
|
| [»] scaffold0475 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 155 - 414
Target Start/End: Original strand, 5662583 - 5662842
Alignment:
| Q |
155 |
tcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattc |
254 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5662583 |
tcctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattc |
5662682 |
T |
 |
| Q |
255 |
atctcatcctttgatttaatctgacttctaactttcatttccccatgccacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5662683 |
atctcatcctttgatttaatctgacttcaaactttcatttccccatgccacaattcaaattcaagtttaccgtgcattgtaaatgacaaacaattaatgt |
5662782 |
T |
 |
| Q |
355 |
taactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5662783 |
taactgtttccaatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa |
5662842 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 5657613 - 5657751
Alignment:
| Q |
10 |
ataatactttattttccaatataaataaaaaatccatattttgttaaatatgaaaatgttggtgagctaggttaactttcattcactttatcactaatta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5657613 |
ataatactttattttccaatataaataaaaaatccatattttgttaaatatgaaaatgttggtgagctaggttaattttcattcactttatcactaatta |
5657712 |
T |
 |
| Q |
110 |
agcatgacaaaaatttccttattatgaaatcatacttat |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5657713 |
agcatgacaaaaatttccttattatgaaatcatacttat |
5657751 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 27541679 - 27541539
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcat |
237 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || || ||| |||| ||||| ||||| |||||||| |
|
|
| T |
27541679 |
atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatctcat |
27541580 |
T |
 |
| Q |
238 |
catttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
27541579 |
catttggctaagcatgcatctcatcctttgatctaatctga |
27541539 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 14678142 - 14678001
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| || ||| ||| || || ||||| | ||||| ||||||| |
|
|
| T |
14678142 |
atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
14678043 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
14678042 |
tcatttggctaagcatgcatctcatcctttgatctaatctga |
14678001 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 278
Target Start/End: Original strand, 5657771 - 5657912
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| || ||| ||| || || ||||| | ||||| ||||||| |
|
|
| T |
5657771 |
atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctca |
5657870 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||| || |||| |||||||||||||||| |||||||| |
|
|
| T |
5657871 |
tcatttggttaagcatgcatctcatcctttgatctaatctga |
5657912 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 31100993 - 31100852
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| || ||| ||| || || ||||| | ||||| ||||||| |
|
|
| T |
31100993 |
atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctca |
31100894 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||| || |||| ||||||||||||||| |||||||| |
|
|
| T |
31100893 |
tcatttggttaagcatgtatctcatcctttgatctaatctga |
31100852 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 24788156 - 24788096
Alignment:
| Q |
136 |
aaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta |
196 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24788156 |
aaatcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaaccta |
24788096 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 281
Target Start/End: Original strand, 8158460 - 8158604
Alignment:
| Q |
137 |
aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||| || ||||||| |||||||||| | |||| ||||||||| ||| ||| ||||| |||| | |
|
|
| T |
8158460 |
aatcatacttatatctaatttttgttaacaatgctaattaccttgcaaaacctaaacctaagtattttgggcgccaattaagcagggccgtttgatcaaa |
8158559 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctgactt |
281 |
Q |
| |
|
| | | |||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
8158560 |
tgagctagctaatcattcatctcatcctttgatctaatctgactt |
8158604 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 23738657 - 23738715
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta |
196 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23738657 |
atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaacccta |
23738715 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 24787220 - 24787162
Alignment:
| Q |
136 |
aaatcatacttatatctaatccta--attaacattgctaatgactttgcaaaccctaaa |
192 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
24787220 |
aaatcatacttatatctaatcttataattaacattgctaatgactttgcaaatcctaaa |
24787162 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 33689420 - 33689362
Alignment:
| Q |
133 |
atgaaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaa |
191 |
Q |
| |
|
|||| ||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
33689420 |
atgatatcatacctatatctaatctttgttaacattgctaatgactttgcagaccctaa |
33689362 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 5686812 - 5686850
Alignment:
| Q |
41 |
atccatattttgttaaatatgaaaatgttggtgagctag |
79 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
5686812 |
atccatatttttttaaatatgaaaatcttggtgagctag |
5686850 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 5718951 - 5718991
Alignment:
| Q |
36 |
aaaaaatccatattttgttaaatatgaaaatgttggtgagc |
76 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||||||||||| |
|
|
| T |
5718951 |
aaaatatccatattttttaaaatatgaaaatgttggtgagc |
5718991 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 139 - 291
Target Start/End: Original strand, 24454516 - 24454668
Alignment:
| Q |
139 |
tcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatc |
238 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
24454516 |
tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaacaaggagggccgttggatctcatc |
24454615 |
T |
 |
| Q |
239 |
atttggctaggcattcatctcatcctttgatttaatctgacttctaactttca |
291 |
Q |
| |
|
|||||||| | |||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
24454616 |
atttggcttgacattcatctcatcctttgatctaatctgacttcaaactttca |
24454668 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 137 - 278
Target Start/End: Complemental strand, 23349102 - 23348960
Alignment:
| Q |
137 |
aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctc |
235 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| || ||| ||| || || ||||| | ||||| |||||| |
|
|
| T |
23349102 |
aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc |
23349003 |
T |
 |
| Q |
236 |
atcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
23349002 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
23348960 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 10329013 - 10328871
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgc-caatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| ||| ||| || | || ||||| | ||||| ||||||| |
|
|
| T |
10329013 |
atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctca |
10328914 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcc-tttgatttaatctga |
278 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||| |||||||| |
|
|
| T |
10328913 |
tcatttggctaagcatgcatctcatccttttgatctaatctga |
10328871 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 18355434 - 18355293
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaa-ggaggtccgttagatctc |
235 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||| || ||| ||| || || ||| |||||| |||| |||||| |
|
|
| T |
18355434 |
atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggt-cgttggatctc |
18355336 |
T |
 |
| Q |
236 |
atcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| || |||||||| |
|
|
| T |
18355335 |
atcatttggctaagcatgcatctcatcctttaatctaatctga |
18355293 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 12741711 - 12741829
Alignment:
| Q |
161 |
ttaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatc--aaggaggtccgttagatctcatcatttggctaggcattcatct |
258 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || ||| ||| |||| ||||||| ||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
12741711 |
ttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggagg-ccgttggatctcatcatttggctaagcatgcatct |
12741809 |
T |
 |
| Q |
259 |
catcctttgatttaatctga |
278 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
12741810 |
catcctttgatctaatctga |
12741829 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 997882 - 997958
Alignment:
| Q |
200 |
tttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattcatctcatcctttgatttaatct |
276 |
Q |
| |
|
||||||||||||||| ||||| | ||||| |||| ||||| || ||| |||||||||||||||||| || |||||| |
|
|
| T |
997882 |
tttttaggcgccaattaaggatggccgtttgatcaaatcatctgactaagcattcatctcatcctttcatctaatct |
997958 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 1615948 - 1615899
Alignment:
| Q |
225 |
cgttagatctcatcatttggctaggcattcatctcatcctttgatttaat |
274 |
Q |
| |
|
|||| |||| ||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
1615948 |
cgttggatcgcatcatttggctaagcatgcatctcatcctttgatctaat |
1615899 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 144 - 303
Target Start/End: Complemental strand, 22004571 - 22004412
Alignment:
| Q |
144 |
cttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttg |
243 |
Q |
| |
|
||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
22004571 |
cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctcatcatttg |
22004472 |
T |
 |
| Q |
244 |
gctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcc |
303 |
Q |
| |
|
||| |||||||| |||||||||||| |||| | ||||| || ||||||||||||||||| |
|
|
| T |
22004471 |
gctcagcattcatatcatcctttgatctaatgtcacttcaaagtttcatttccccatgcc |
22004412 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 22009649 - 22009508
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| || ||| ||| || || ||||| | ||||| ||||||| |
|
|
| T |
22009649 |
atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
22009550 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
22009549 |
tcatttggctaagcatgcatctcatcctttgatctaatctga |
22009508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 9043801 - 9043943
Alignment:
| Q |
137 |
aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctc |
235 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| || ||| ||| || || ||||| | ||||| |||||| |
|
|
| T |
9043801 |
aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc |
9043900 |
T |
 |
| Q |
236 |
atcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
9043901 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
9043943 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 7473610 - 7473469
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| || ||| ||| || || ||||| | ||||| ||||||| |
|
|
| T |
7473610 |
atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
7473511 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||| |||| |||| |||||||||||||||| |||||||| |
|
|
| T |
7473510 |
tcatttagctaagcatgcatctcatcctttgatctaatctga |
7473469 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 278
Target Start/End: Complemental strand, 30442667 - 30442527
Alignment:
| Q |
139 |
tcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcat |
237 |
Q |
| |
|
|||| ||||||||||||| | |||||||||||||||| |||||||||||||||||| || ||| ||| |||| ||||| | ||||| |||||||| |
|
|
| T |
30442667 |
tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat |
30442568 |
T |
 |
| Q |
238 |
catttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
30442567 |
catttggctaagcatgcatctcatcctttgatctaatctga |
30442527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 19085498 - 19085440
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta |
196 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19085498 |
atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaaccta |
19085440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 302
Target Start/End: Complemental strand, 30463172 - 30463006
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgc-aaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||| || |||| ||||||||||||||| |||| ||||||||| |||||| ||||| |||| | |
|
|
| T |
30463172 |
atcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaacctagccattttgggcgccaattaaggagagccgtttgatcaaa |
30463073 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttca-tttccccatgc |
302 |
Q |
| |
|
| | | |||| ||||||||||||||||||||| | || |||||| ||||||| ||||||||||| |
|
|
| T |
30463072 |
tgagctagctaagcattcatctcatcctttgatctcatttgacttggcactttcagtttccccatgc |
30463006 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 26841062 - 26841027
Alignment:
| Q |
161 |
ttaacattgctaatgactttgcaaaccctaaaccta |
196 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26841062 |
ttaacattgctaatgattttgcaaaccctaaaccta |
26841027 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 136 - 297
Target Start/End: Original strand, 27408 - 27569
Alignment:
| Q |
136 |
aaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctc |
235 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| || ||| ||| |||| ||||| | ||||| |||||| |
|
|
| T |
27408 |
aaatcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctc |
27507 |
T |
 |
| Q |
236 |
atcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccc |
297 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||| ||||||| |||||||||||||| |
|
|
| T |
27508 |
atcatttggctaagcatgcatctcatcctttgatctaatttgacttcaaactttcatttccc |
27569 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 47764028 - 47763911
Alignment:
| Q |
145 |
ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttgg |
244 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
47764028 |
ttatatctaatcctacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctgg |
47763929 |
T |
 |
| Q |
245 |
ctaggcattcatctcatc |
262 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
47763928 |
ctaggcattcatctcatc |
47763911 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 24762020 - 24761853
Alignment:
| Q |
137 |
aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctc |
235 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| ||| || || ||| | | ||||| |||||| |
|
|
| T |
24762020 |
aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctc |
24761921 |
T |
 |
| Q |
236 |
atcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcc |
303 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||| ||||||| |||||| ||||||||||||| |
|
|
| T |
24761920 |
atcatttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcc |
24761853 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 138 - 278
Target Start/End: Original strand, 2549937 - 2550077
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||| || || ||||| | ||||| ||||| | |
|
|
| T |
2549937 |
atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-a |
2550035 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
2550036 |
tcatttggctaagcatgcatctcatcctttgatttaatctga |
2550077 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 138 - 302
Target Start/End: Original strand, 24815915 - 24816080
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| ||| || || | | | | ||||| ||||||| |
|
|
| T |
24815915 |
atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctca |
24816014 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgc |
302 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||| ||||||| |||||| |||||||||||| |
|
|
| T |
24816015 |
tcatttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgc |
24816080 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 31688029 - 31688140
Alignment:
| Q |
303 |
cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg |
402 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | |||||||||| |||||||||||||||||| |||| ||| ||| |
|
|
| T |
31688029 |
cacaattcaaattcaagtttacggtgcattgtaaatgacaaataattaatgttatcggtttccaataaagtgttgcatatccatcttattggaaacaatg |
31688128 |
T |
 |
| Q |
403 |
gctctgacctaa |
414 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31688129 |
gctctgacctaa |
31688140 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 31685076 - 31685218
Alignment:
| Q |
137 |
aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc--aatcaaggaggtccgttagatct |
234 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||| ||| || ||| | ||||| ||||| |||| |
|
|
| T |
31685076 |
aatcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggagg-ccgttgaatct |
31685174 |
T |
 |
| Q |
235 |
catcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
31685175 |
catcatttggctaagcatgcatctcatcctttgatctaatctga |
31685218 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 31896838 - 31896727
Alignment:
| Q |
303 |
cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg |
402 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||| |||| ||| ||| |
|
|
| T |
31896838 |
cacaattcaaattcaagtttactgtgcattgtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatg |
31896739 |
T |
 |
| Q |
403 |
gctctgacctaa |
414 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31896738 |
gctctgacctaa |
31896727 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 31912547 - 31912436
Alignment:
| Q |
303 |
cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg |
402 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||| |||| ||| ||| |
|
|
| T |
31912547 |
cacaattcaaattcaagtttactgtgcattgtaaatgacaaataattaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatg |
31912448 |
T |
 |
| Q |
403 |
gctctgacctaa |
414 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31912447 |
gctctgacctaa |
31912436 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 17681767 - 17681905
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcat |
237 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||| ||||||||||||||||||| || ||| ||| |||| ||||| || ||||| |||||||| |
|
|
| T |
17681767 |
atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcat |
17681866 |
T |
 |
| Q |
238 |
catttggctaggcattcatctcatcctttgatttaatct |
276 |
Q |
| |
|
||||||| || |||| |||||||||||||||| |||||| |
|
|
| T |
17681867 |
catttggttaagcatgcatctcatcctttgatctaatct |
17681905 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 138 - 297
Target Start/End: Complemental strand, 12538756 - 12538597
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcat |
237 |
Q |
| |
|
||||||||||||||||||| | ||||| || ||||||| ||||||||||||||||||| || ||| ||| |||| ||||| | ||||| |||||||| |
|
|
| T |
12538756 |
atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat |
12538657 |
T |
 |
| Q |
238 |
catttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccc |
297 |
Q |
| |
|
|||||||||| |||| |||| ||||||||||| |||| | ||||| |||||||| ||||| |
|
|
| T |
12538656 |
catttggctaagcatgcatcacatcctttgatctaatttaacttcaaactttcaattccc |
12538597 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 31946195 - 31946084
Alignment:
| Q |
303 |
cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg |
402 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||| | ||||||||| |||||||||||||||||| |||| ||| ||| |
|
|
| T |
31946195 |
cacaattcaaattcaagtttactgtgcattgtaaatgacaaataatgaatgttatcgatttccaataaagtgttgcatatccatcttattggaaacaatg |
31946096 |
T |
 |
| Q |
403 |
gctctgacctaa |
414 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31946095 |
gctctgacctaa |
31946084 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 53973407 - 53973266
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| || ||| ||| || |||||||| | ||||| ||||||| |
|
|
| T |
53973407 |
atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctca |
53973308 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
||||||||||| || | |||||||||||||||| |||||||| |
|
|
| T |
53973307 |
tcatttggctaagcctgcatctcatcctttgatctaatctga |
53973266 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 136 - 278
Target Start/End: Original strand, 37982347 - 37982490
Alignment:
| Q |
136 |
aaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatct |
234 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| || ||| ||| || || ||||| | ||||| ||||| |
|
|
| T |
37982347 |
aaatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct |
37982446 |
T |
 |
| Q |
235 |
catcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| || |||||||| |
|
|
| T |
37982447 |
catcatttggctaagcatgcatctcatcctttaatctaatctga |
37982490 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 53352882 - 53352716
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||| ||| || || | | | | ||||| ||||||| |
|
|
| T |
53352882 |
atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctca |
53352783 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcc |
303 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||| ||||||| |||||| |||||| |||||| |
|
|
| T |
53352782 |
tcatttggctcagtgtgcatctcatcctttgatttaatttgacttcaaacttttatttcctcatgcc |
53352716 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 19882225 - 19882091
Alignment:
| Q |
145 |
ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatcatttg |
243 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||| |||||||||||||| || ||| ||| |||| ||||| | ||||| |||||||||||||| |
|
|
| T |
19882225 |
ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg |
19882126 |
T |
 |
| Q |
244 |
gctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||| |||| |||||||||||||||| |||||||| |
|
|
| T |
19882125 |
gctaagcatgcatctcatcctttgatctaatctga |
19882091 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 297
Target Start/End: Complemental strand, 53027873 - 53027713
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggt---ccgttagatct |
234 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||| || ||| | | |||| || || | ||||| ||||| |
|
|
| T |
53027873 |
atcatacttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaa--aatgatgctgaccgttggatct |
53027776 |
T |
 |
| Q |
235 |
catcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccc |
297 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||| ||||||| |||||| ||||||| |
|
|
| T |
53027775 |
catcatttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccc |
53027713 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 53352008 - 53351956
Alignment:
| Q |
185 |
accctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcat |
237 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
53352008 |
accctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctcat |
53351956 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 38612051 - 38612019
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgc |
170 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
38612051 |
atcatacttatttctaatcctaattaacattgc |
38612019 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 303 - 410
Target Start/End: Complemental strand, 36903 - 36796
Alignment:
| Q |
303 |
cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcgaaccatg |
402 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
36903 |
cacaattcaaattcaagtttacagtgcattgtaaatgacaaataattaatgttatcggtttccaatacagtgttgcatatccatctcattggaaacaatg |
36804 |
T |
 |
| Q |
403 |
gctctgac |
410 |
Q |
| |
|
|||||||| |
|
|
| T |
36803 |
gctctgac |
36796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 43087 - 42974
Alignment:
| Q |
303 |
cacaattcaaattaaagtttaccgtgcattgtaaat-gacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcg-aacca |
400 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| |||||| | ||||||||| | |||| ||||||||||||||||||||| |||||| | ||| | |
|
|
| T |
43087 |
cacaattcaaattcaagtttacggtgcattgtaaattgacaaatagttaatgttatcggttttgaatacagtgttgcatatccatttcattgggaaacaa |
42988 |
T |
 |
| Q |
401 |
tggctctgacctaa |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42987 |
tggctctgacctaa |
42974 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 134 - 278
Target Start/End: Original strand, 1262084 - 1262229
Alignment:
| Q |
134 |
tgaaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagat |
232 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || ||| ||| || || ||||| ||||| ||| |
|
|
| T |
1262084 |
tgaaatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggat |
1262183 |
T |
 |
| Q |
233 |
ctcatcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
1262184 |
ctcatcatttggctaagcatgcatctcatcctttgatctaatctga |
1262229 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 43071503 - 43071362
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| || ||| ||| |||| ||||| | ||||| ||||||| |
|
|
| T |
43071503 |
atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
43071404 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
43071403 |
tcatttggctaagcatgcatctcatcctttgatctaatctga |
43071362 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 278
Target Start/End: Complemental strand, 26910103 - 26909961
Alignment:
| Q |
137 |
aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctc |
235 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| || || ||| || || ||||| | || || ||||| |
|
|
| T |
26910103 |
aatcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctt |
26910004 |
T |
 |
| Q |
236 |
atcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
26910003 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
26909961 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 278
Target Start/End: Complemental strand, 48849929 - 48849787
Alignment:
| Q |
137 |
aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctc |
235 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||||| || ||| ||| || || ||||| | ||| |||||| |
|
|
| T |
48849929 |
aatcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctc |
48849830 |
T |
 |
| Q |
236 |
atcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
48849829 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
48849787 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 11649523 - 11649475
Alignment:
| Q |
366 |
aatacagtgttgcatatccatctcattgcgaaccatggctctgacctaa |
414 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
11649523 |
aatacaatgttgcatatccatctcattggaaaccatggctttgacctaa |
11649475 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 130 - 278
Target Start/End: Original strand, 35055 - 35204
Alignment:
| Q |
130 |
attatgaaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaa-ggaggtccgt |
227 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || ||| ||| || || ||| |||||| || |
|
|
| T |
35055 |
attatgcaatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggt-tgt |
35153 |
T |
 |
| Q |
228 |
tagatctcatcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
| |||||||||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
35154 |
tggatctcatcatttggctaagcatgcatctcatcctttgatctaatctga |
35204 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 11755 - 11614
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||| | | || || ||||| | ||||| ||||||| |
|
|
| T |
11755 |
atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctca |
11656 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
11655 |
tcatttggttaagcatgcatctcatcctttgatttaatctga |
11614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 29863482 - 29863341
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||| || ||| ||| || || ||||| | ||||| ||||||| |
|
|
| T |
29863482 |
atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
29863383 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
29863382 |
tcatttggctgagcatgcatctcatcctttgatctaatctga |
29863341 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 12506435 - 12506511
Alignment:
| Q |
137 |
aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa |
213 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| || ||| |||||||| |
|
|
| T |
12506435 |
aatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaataatttgggcgccaa |
12506511 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 38014347 - 38014415
Alignment:
| Q |
136 |
aaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa |
213 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
38014347 |
aaatcatacttatatctaatccta--------tgctaatgactttacaaaacctaaacctaga-tttttaggcgccaa |
38014415 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 24260243 - 24260278
Alignment:
| Q |
161 |
ttaacattgctaatgactttgcaaaccctaaaccta |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24260243 |
ttaacattgctaatgactttgcaaaccctaacccta |
24260278 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 170
Target Start/End: Original strand, 10195656 - 10195685
Alignment:
| Q |
141 |
atacttatatctaatcctaattaacattgc |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10195656 |
atacttatatctaatcctaattaacattgc |
10195685 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 33045545 - 33045411
Alignment:
| Q |
145 |
ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc--aatcaaggaggtccgttagatctcatcattt |
242 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||| || ||| ||| || ||| | ||||| ||||| ||||||||||||| |
|
|
| T |
33045545 |
ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggagg-ccgttggatctcatcattt |
33045447 |
T |
 |
| Q |
243 |
ggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|| || |||| |||||||||||||||| |||||||| |
|
|
| T |
33045446 |
ggttaagcatgcatctcatcctttgatctaatctga |
33045411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 3065697 - 3065807
Alignment:
| Q |
137 |
aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| || ||| ||| |||| ||||| | ||||| ||||||| |
|
|
| T |
3065697 |
aatcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctca |
3065796 |
T |
 |
| Q |
237 |
tcatttggcta |
247 |
Q |
| |
|
||||||||||| |
|
|
| T |
3065797 |
tcatttggcta |
3065807 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 27444274 - 27444387
Alignment:
| Q |
303 |
cacaattcaaattaaagtttaccgtgcattgtaaa-tgacaaacaattaatgttaactgtttccaatacagtgttgcatatccatctcattgcg-aacca |
400 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| ||||||| | ||||||||| | |||| ||||||||||||||||||||| |||||| | ||| | |
|
|
| T |
27444274 |
cacaattcaaattcaagtttacggtgcattgtaaattgacaaatagttaatgttatcggttttgaatacagtgttgcatatccatttcattgggaaacaa |
27444373 |
T |
 |
| Q |
401 |
tggctctgacctaa |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27444374 |
tggctctgacctaa |
27444387 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 10092512 - 10092641
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgcc-aatcaaggaggtccgttagatctca |
236 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||| || ||| ||| || || ||||| | ||||| ||||||| |
|
|
| T |
10092512 |
atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctca |
10092611 |
T |
 |
| Q |
237 |
tcatttggctaggcattcatctcatccttt |
266 |
Q |
| |
|
||||||||||| |||| |||||||| |||| |
|
|
| T |
10092612 |
tcatttggctaagcatgcatctcattcttt |
10092641 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 8976411 - 8976571
Alignment:
| Q |
145 |
ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatc-aaggaggtccgttagatctcatcatttg |
243 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||| ||||| ||||||||| || ||| ||| |||| |||| | ||||| |||||||| |||| |
|
|
| T |
8976411 |
ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattattta |
8976510 |
T |
 |
| Q |
244 |
gctaggcattcatctcatcctttgatttaatctgacttctaactttcatttccccatgcca |
304 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
8976511 |
gctaaacatgcatctcatcctttgatctaatctgatcgcagactttcatttccccatgcca |
8976571 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 16246700 - 16246760
Alignment:
| Q |
136 |
aaatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta |
196 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||| |
|
|
| T |
16246700 |
aaatcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatccta |
16246760 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 4660295 - 4660238
Alignment:
| Q |
139 |
tcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta |
196 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4660295 |
tcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaacccta |
4660238 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 30908483 - 30908436
Alignment:
| Q |
145 |
ttatatctaatcctaattaacattgctaatgactttgcaaaccctaaa |
192 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
30908483 |
ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaa |
30908436 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 278
Target Start/End: Original strand, 654 - 795
Alignment:
| Q |
138 |
atcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa--tcaaggaggtccgttagatctc |
235 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||||||| |||||||||||||||||| || ||| | | |||| | | ||||| ||||| |||||| |
|
|
| T |
654 |
atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggagg-ccgttggatctc |
752 |
T |
 |
| Q |
236 |
atcatttggctaggcattcatctcatcctttgatttaatctga |
278 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
753 |
atcatttggctaagcatgcatctcatcctttgatctaatctga |
795 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 14042 - 13966
Alignment:
| Q |
137 |
aatcatacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa |
213 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| || ||| |||||||| |
|
|
| T |
14042 |
aatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaataatttgggcgccaa |
13966 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 302
Target Start/End: Original strand, 25223217 - 25223385
Alignment:
| Q |
136 |
aaatcatacttatatctaatcctaattaacattgctaatgactttgc-aaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatct |
234 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||||| || |||| |||||||||| |||| |||| ||||||||| |||||| ||||| |||| |
|
|
| T |
25223217 |
aaatcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaagctagccattttgggcgccaattaaggagagccgtttgatca |
25223316 |
T |
 |
| Q |
235 |
catcatttggctaggcattcatctcatcctttgatttaatctgacttctaactttca-tttccccatgc |
302 |
Q |
| |
|
|| | | |||| ||||||||||||||||||||| | || |||||| ||||||| ||||||||||| |
|
|
| T |
25223317 |
aatgagctagctaagcattcatctcatcctttgatctcatttgacttggcactttcagtttccccatgc |
25223385 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 7608179 - 7608113
Alignment:
| Q |
303 |
cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaata |
369 |
Q |
| |
|
|||||||||| || |||||||| ||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
7608179 |
cacaattcaagttcaagtttacagtgtattgtaaatgacaaataattaatgttattggtttccaata |
7608113 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 50990911 - 50990965
Alignment:
| Q |
142 |
tacttatatctaatcctaattaacattgctaatgactttgcaaaccctaaaccta |
196 |
Q |
| |
|
||||||||||||||| | ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
50990911 |
tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaaccta |
50990965 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 31771167 - 31771101
Alignment:
| Q |
303 |
cacaattcaaattaaagtttaccgtgcattgtaaatgacaaacaattaatgttaactgtttccaata |
369 |
Q |
| |
|
|||||||||| || || ||||| ||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
31771167 |
cacaattcaagttcaaatttacagtgtattgtaaatgacaaataattaatgttattggtttccaata |
31771101 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 7571 - 7536
Alignment:
| Q |
161 |
ttaacattgctaatgactttgcaaaccctaaaccta |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7571 |
ttaacattgctaatgactttgcaaaccctaacccta |
7536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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