View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16449_low_2 (Length: 457)
Name: NF16449_low_2
Description: NF16449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16449_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 81 - 442
Target Start/End: Complemental strand, 1568364 - 1568002
Alignment:
| Q |
81 |
atttatgagagatttaaaagtaatttactacacaaaagtgtttcacatttcatagaatctcttttagaatgattaaaattcaagatttacaagatactaa |
180 |
Q |
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| T |
1568364 |
atttatgagagatttaaaagtaatttacttcacaaaagtgtttcacatttcatagaatctcttttagaatgattcaaattcaagatttacaagatactaa |
1568265 |
T |
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| Q |
181 |
caaga--tatgagtgagggacagaggagacaaggcaccatgaagcacataatgataatcaaaattacataaaataggtaatatatattaatgacatttaa |
278 |
Q |
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| T |
1568264 |
caagagatatgagtgagggacaaaagaaacaaggcaccatgaagcacataatgataatcaaaattacataaaataggtaatatatattaatgacatcgaa |
1568165 |
T |
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| Q |
279 |
tttcaaattacatatnnnnnnntgaacacataagaattctcccttaaatagaaaggaaaagataaaggaacaattcccttcatttgctggttaagggcag |
378 |
Q |
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| T |
1568164 |
ttccaaattacatataaaaaaatgaacacataagaattctcccttaaatagaaaggaaaaaataaaggaacaattcccttcatttgctggttaagggcag |
1568065 |
T |
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| Q |
379 |
tatccaataattcagaaagaaaataaattaaataataggagtatttcttttctagggacaaaat |
442 |
Q |
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| T |
1568064 |
tatccaataattcagaaagaaaataaattaaataataggagta-ttcttttctagggacaaaat |
1568002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 1568503 - 1568451
Alignment:
| Q |
13 |
aaaatatatcgctcacaagtgtatatcacctccaaaagcacttgttagcattt |
65 |
Q |
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| T |
1568503 |
aaaatatatcgctcacaagtgtatatcacctccaaaagcacttgttagcattt |
1568451 |
T |
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